Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2091 and GFF2092 are separated by 186 nucleotides GFF2092 and GFF2093 are separated by 150 nucleotides GFF2093 and GFF2094 overlap by 40 nucleotides
GFF2091 - hypothetical protein, at 776,591 to 777,340
GFF2091
GFF2092 - hypothetical protein, at 777,527 to 777,826
GFF2092
GFF2093 - hypothetical protein, at 777,977 to 778,396
GFF2093
GFF2094 - hypothetical protein, at 778,357 to 779,046
GFF2094
Position (kb) 777
778 Strain fitness (log2 ratio) -1
0
1
2 at 776.739 kb on + strand, within GFF2091 at 776.740 kb on - strand, within GFF2091 at 776.740 kb on - strand, within GFF2091 at 777.070 kb on - strand, within GFF2091 at 777.430 kb on + strand at 777.676 kb on - strand, within GFF2092 at 777.676 kb on - strand, within GFF2092 at 777.819 kb on + strand at 777.820 kb on - strand at 777.878 kb on - strand at 777.992 kb on + strand at 778.130 kb on + strand, within GFF2093 at 778.131 kb on - strand, within GFF2093 at 778.187 kb on + strand, within GFF2093 at 778.695 kb on + strand, within GFF2094 at 778.695 kb on + strand, within GFF2094 at 778.695 kb on + strand, within GFF2094 at 778.696 kb on - strand, within GFF2094 at 778.696 kb on - strand, within GFF2094 at 778.696 kb on - strand, within GFF2094 at 778.696 kb on - strand, within GFF2094
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 776,739 + GFF2091 0.20 +0.4 776,740 - GFF2091 0.20 -1.0 776,740 - GFF2091 0.20 +2.4 777,070 - GFF2091 0.64 -1.1 777,430 + +0.2 777,676 - GFF2092 0.50 +1.3 777,676 - GFF2092 0.50 -0.2 777,819 + +1.4 777,820 - -0.2 777,878 - +0.1 777,992 + -0.8 778,130 + GFF2093 0.36 +0.4 778,131 - GFF2093 0.37 -0.8 778,187 + GFF2093 0.50 +0.1 778,695 + GFF2094 0.49 -0.9 778,695 + GFF2094 0.49 +0.3 778,695 + GFF2094 0.49 -0.6 778,696 - GFF2094 0.49 -0.1 778,696 - GFF2094 0.49 +0.7 778,696 - GFF2094 0.49 +0.0 778,696 - GFF2094 0.49 +0.3
Or see this region's nucleotide sequence