Strain Fitness in Xanthobacter sp. DMC5 around GFF2090

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2089 and GFF2090 are separated by 36 nucleotidesGFF2090 and GFF2091 are separated by 237 nucleotides GFF2089 - tRNA N6-adenosine threonylcarbamoyltransferase, at 774,296 to 775,366 GFF2089 GFF2090 - Glycerol-3-phosphate dehydrogenase [NAD(P)+], at 775,403 to 776,353 GFF2090 GFF2091 - hypothetical protein, at 776,591 to 777,340 GFF2091 Position (kb) 775 776 777Strain fitness (log2 ratio) -1 0 1 2at 776.060 kb on + strand, within GFF2090at 776.739 kb on + strand, within GFF2091at 776.740 kb on - strand, within GFF2091at 776.740 kb on - strand, within GFF2091at 777.070 kb on - strand, within GFF2091

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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776,060 + GFF2090 0.69 +0.1
776,739 + GFF2091 0.20 +0.4
776,740 - GFF2091 0.20 -1.0
776,740 - GFF2091 0.20 +2.4
777,070 - GFF2091 0.64 -1.1

Or see this region's nucleotide sequence