Strain Fitness in Xanthobacter sp. DMC5 around GFF2089

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2088 and GFF2089 are separated by 119 nucleotidesGFF2089 and GFF2090 are separated by 36 nucleotides GFF2088 - Porphobilinogen deaminase, at 773,232 to 774,176 GFF2088 GFF2089 - tRNA N6-adenosine threonylcarbamoyltransferase, at 774,296 to 775,366 GFF2089 GFF2090 - Glycerol-3-phosphate dehydrogenase [NAD(P)+], at 775,403 to 776,353 GFF2090 Position (kb) 774 775 776Strain fitness (log2 ratio) -1 0 1 2at 774.212 kb on - strandat 776.060 kb on + strand, within GFF2090

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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774,212 - +2.4
776,060 + GFF2090 0.69 +0.1

Or see this region's nucleotide sequence