Strain Fitness in Xanthobacter sp. DMC5 around GFF2079

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2078 and GFF2079 are separated by 70 nucleotidesGFF2079 and GFF2080 are separated by 304 nucleotidesGFF2080 and GFF2081 are separated by 66 nucleotides GFF2078 - 60 kDa chaperonin 5, at 759,111 to 760,757 GFF2078 GFF2079 - 10 kDa chaperonin 1, at 760,828 to 761,118 GFF2079 GFF2080 - hypothetical protein, at 761,423 to 761,962 GFF2080 GFF2081 - Glutaminase 1, at 762,029 to 763,054 GFF2081 Position (kb) 760 761 762Strain fitness (log2 ratio) -2 -1 0 1at 760.151 kb on - strand, within GFF2078at 760.151 kb on - strand, within GFF2078at 760.162 kb on + strand, within GFF2078at 760.769 kb on + strandat 760.770 kb on - strandat 760.815 kb on - strandat 761.127 kb on - strandat 761.205 kb on + strandat 761.206 kb on - strandat 761.254 kb on + strandat 761.254 kb on + strandat 761.255 kb on - strandat 761.255 kb on - strandat 761.255 kb on - strandat 761.357 kb on + strandat 761.357 kb on + strandat 761.357 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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760,151 - GFF2078 0.63 +0.5
760,151 - GFF2078 0.63 -0.5
760,162 + GFF2078 0.64 -0.0
760,769 + -0.4
760,770 - -0.3
760,815 - +0.8
761,127 - +0.2
761,205 + -1.9
761,206 - +0.0
761,254 + +0.2
761,254 + -1.1
761,255 - -0.2
761,255 - -0.2
761,255 - +0.5
761,357 + -0.4
761,357 + +0.2
761,357 + -1.1

Or see this region's nucleotide sequence