Strain Fitness in Xanthobacter sp. DMC5 around GFF2071

Experiment: Methanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2069 and GFF2070 overlap by 4 nucleotidesGFF2070 and GFF2071 are separated by 85 nucleotidesGFF2071 and GFF2072 are separated by 106 nucleotides GFF2069 - hypothetical protein, at 749,757 to 750,917 GFF2069 GFF2070 - hypothetical protein, at 750,914 to 751,603 GFF2070 GFF2071 - hypothetical protein, at 751,689 to 752,897 GFF2071 GFF2072 - Adenine DNA glycosylase, at 753,004 to 754,161 GFF2072 Position (kb) 751 752 753Strain fitness (log2 ratio) -2 -1 0 1 2at 751.511 kb on + strand, within GFF2070at 751.602 kb on - strandat 752.896 kb on - strandat 753.389 kb on + strand, within GFF2072at 753.593 kb on + strand, within GFF2072at 753.619 kb on - strand, within GFF2072at 753.678 kb on + strand, within GFF2072at 753.678 kb on + strand, within GFF2072at 753.680 kb on + strand, within GFF2072at 753.681 kb on - strand, within GFF2072at 753.792 kb on - strand, within GFF2072at 753.795 kb on - strand, within GFF2072at 753.888 kb on - strand, within GFF2072at 753.888 kb on - strand, within GFF2072

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
remove
751,511 + GFF2070 0.87 -1.0
751,602 - -0.9
752,896 - +2.0
753,389 + GFF2072 0.33 +0.5
753,593 + GFF2072 0.51 -0.4
753,619 - GFF2072 0.53 -0.6
753,678 + GFF2072 0.58 -0.6
753,678 + GFF2072 0.58 +0.2
753,680 + GFF2072 0.58 +0.4
753,681 - GFF2072 0.58 -2.1
753,792 - GFF2072 0.68 -0.2
753,795 - GFF2072 0.68 +0.8
753,888 - GFF2072 0.76 -0.6
753,888 - GFF2072 0.76 +0.8

Or see this region's nucleotide sequence