Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2067 and GFF2068 are separated by 111 nucleotides GFF2068 and GFF2069 are separated by 198 nucleotides
GFF2067 - HTH-type transcriptional regulator DegA, at 747,429 to 748,526
GFF2067
GFF2068 - 2-hydroxy-3-oxopropionate reductase, at 748,638 to 749,558
GFF2068
GFF2069 - hypothetical protein, at 749,757 to 750,917
GFF2069
Position (kb) 748
749
750 Strain fitness (log2 ratio) -1
0
1
2 at 747.638 kb on - strand, within GFF2067 at 747.668 kb on + strand, within GFF2067 at 748.131 kb on + strand, within GFF2067 at 748.132 kb on - strand, within GFF2067 at 748.132 kb on - strand, within GFF2067 at 748.321 kb on + strand, within GFF2067 at 748.537 kb on + strand at 748.538 kb on - strand at 748.538 kb on - strand at 748.538 kb on - strand at 749.187 kb on + strand, within GFF2068 at 749.199 kb on + strand, within GFF2068 at 749.199 kb on + strand, within GFF2068 at 749.199 kb on + strand, within GFF2068 at 749.200 kb on - strand, within GFF2068 at 749.292 kb on + strand, within GFF2068 at 749.293 kb on - strand, within GFF2068 at 749.311 kb on - strand, within GFF2068 at 749.376 kb on + strand, within GFF2068 at 749.376 kb on + strand, within GFF2068 at 749.376 kb on + strand, within GFF2068 at 749.441 kb on - strand, within GFF2068 at 749.442 kb on + strand, within GFF2068 at 749.443 kb on - strand, within GFF2068 at 749.474 kb on + strand at 749.474 kb on + strand at 749.557 kb on - strand at 749.572 kb on + strand at 749.700 kb on - strand at 749.865 kb on + strand at 750.009 kb on + strand, within GFF2069 at 750.010 kb on - strand, within GFF2069 at 750.162 kb on + strand, within GFF2069 at 750.162 kb on + strand, within GFF2069 at 750.162 kb on + strand, within GFF2069 at 750.163 kb on - strand, within GFF2069 at 750.163 kb on - strand, within GFF2069 at 750.163 kb on - strand, within GFF2069 at 750.174 kb on + strand, within GFF2069 at 750.175 kb on - strand, within GFF2069 at 750.195 kb on + strand, within GFF2069 at 750.195 kb on + strand, within GFF2069 at 750.195 kb on + strand, within GFF2069 at 750.196 kb on - strand, within GFF2069 at 750.196 kb on - strand, within GFF2069 at 750.196 kb on - strand, within GFF2069 at 750.196 kb on - strand, within GFF2069 at 750.459 kb on + strand, within GFF2069 at 750.459 kb on + strand, within GFF2069 at 750.459 kb on + strand, within GFF2069
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 747,638 - GFF2067 0.19 -1.2 747,668 + GFF2067 0.22 -0.5 748,131 + GFF2067 0.64 -0.4 748,132 - GFF2067 0.64 -1.0 748,132 - GFF2067 0.64 +0.5 748,321 + GFF2067 0.81 -0.4 748,537 + +0.6 748,538 - +0.7 748,538 - +0.7 748,538 - +0.1 749,187 + GFF2068 0.60 -0.3 749,199 + GFF2068 0.61 -0.4 749,199 + GFF2068 0.61 -0.1 749,199 + GFF2068 0.61 +0.1 749,200 - GFF2068 0.61 -0.1 749,292 + GFF2068 0.71 +0.1 749,293 - GFF2068 0.71 -1.6 749,311 - GFF2068 0.73 -0.9 749,376 + GFF2068 0.80 -1.2 749,376 + GFF2068 0.80 -0.3 749,376 + GFF2068 0.80 +1.9 749,441 - GFF2068 0.87 -0.8 749,442 + GFF2068 0.87 +0.9 749,443 - GFF2068 0.87 -0.6 749,474 + +0.4 749,474 + -1.7 749,557 - -0.2 749,572 + -0.3 749,700 - +0.8 749,865 + -0.4 750,009 + GFF2069 0.22 -1.3 750,010 - GFF2069 0.22 +0.5 750,162 + GFF2069 0.35 -0.4 750,162 + GFF2069 0.35 +0.7 750,162 + GFF2069 0.35 +0.8 750,163 - GFF2069 0.35 +0.5 750,163 - GFF2069 0.35 -0.5 750,163 - GFF2069 0.35 -0.2 750,174 + GFF2069 0.36 +0.9 750,175 - GFF2069 0.36 +0.9 750,195 + GFF2069 0.38 +0.4 750,195 + GFF2069 0.38 -0.1 750,195 + GFF2069 0.38 -0.0 750,196 - GFF2069 0.38 +0.2 750,196 - GFF2069 0.38 -0.1 750,196 - GFF2069 0.38 +1.2 750,196 - GFF2069 0.38 -0.7 750,459 + GFF2069 0.60 +0.3 750,459 + GFF2069 0.60 -0.2 750,459 + GFF2069 0.60 -1.1
Or see this region's nucleotide sequence