Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2060 and GFF2061 are separated by 9 nucleotides GFF2061 and GFF2062 overlap by 1 nucleotides GFF2062 and GFF2063 are separated by 136 nucleotides
GFF2060 - NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic, at 738,095 to 739,552
GFF2060
GFF2061 - Formate hydrogenlyase subunit 5, at 739,562 to 741,064
GFF2061
GFF2062 - NAD(P)H-quinone oxidoreductase subunit K, chloroplastic, at 741,064 to 741,576
GFF2062
GFF2063 - hypothetical protein, at 741,713 to 742,615
GFF2063
Position (kb) 739
740
741
742 Strain fitness (log2 ratio) -2
-1
0
1
2 at 738.578 kb on + strand, within GFF2060 at 738.635 kb on + strand, within GFF2060 at 738.635 kb on + strand, within GFF2060 at 738.635 kb on + strand, within GFF2060 at 738.636 kb on - strand, within GFF2060 at 738.636 kb on - strand, within GFF2060 at 738.771 kb on - strand, within GFF2060 at 738.989 kb on + strand, within GFF2060 at 739.023 kb on - strand, within GFF2060 at 739.448 kb on + strand at 739.448 kb on + strand at 739.448 kb on + strand at 739.448 kb on + strand at 739.448 kb on + strand at 739.448 kb on + strand at 739.449 kb on - strand at 739.449 kb on - strand at 739.496 kb on + strand at 739.496 kb on + strand at 739.497 kb on - strand at 739.550 kb on + strand at 739.550 kb on + strand at 739.551 kb on - strand at 739.767 kb on + strand, within GFF2061 at 739.767 kb on + strand, within GFF2061 at 740.063 kb on + strand, within GFF2061 at 740.064 kb on - strand, within GFF2061 at 740.102 kb on + strand, within GFF2061 at 740.102 kb on + strand, within GFF2061 at 740.198 kb on + strand, within GFF2061 at 740.199 kb on - strand, within GFF2061 at 740.199 kb on - strand, within GFF2061 at 740.466 kb on + strand, within GFF2061 at 740.466 kb on + strand, within GFF2061 at 740.467 kb on - strand, within GFF2061 at 740.543 kb on + strand, within GFF2061 at 740.544 kb on - strand, within GFF2061 at 740.604 kb on - strand, within GFF2061 at 740.690 kb on + strand, within GFF2061 at 740.691 kb on - strand, within GFF2061 at 741.044 kb on + strand at 741.045 kb on - strand at 741.054 kb on + strand at 741.265 kb on + strand, within GFF2062 at 741.266 kb on - strand, within GFF2062 at 741.266 kb on - strand, within GFF2062 at 741.266 kb on - strand, within GFF2062 at 741.376 kb on + strand, within GFF2062 at 741.376 kb on + strand, within GFF2062 at 741.376 kb on + strand, within GFF2062 at 741.377 kb on - strand, within GFF2062 at 741.377 kb on - strand, within GFF2062 at 741.377 kb on - strand, within GFF2062 at 741.454 kb on + strand, within GFF2062 at 741.455 kb on - strand, within GFF2062 at 741.455 kb on - strand, within GFF2062 at 741.455 kb on - strand, within GFF2062 at 741.602 kb on + strand at 741.727 kb on + strand at 741.830 kb on + strand, within GFF2063 at 741.831 kb on + strand, within GFF2063 at 741.920 kb on + strand, within GFF2063 at 742.015 kb on + strand, within GFF2063
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 738,578 + GFF2060 0.33 -0.1 738,635 + GFF2060 0.37 -1.4 738,635 + GFF2060 0.37 +0.1 738,635 + GFF2060 0.37 -0.7 738,636 - GFF2060 0.37 +2.4 738,636 - GFF2060 0.37 -0.3 738,771 - GFF2060 0.46 -1.4 738,989 + GFF2060 0.61 -0.0 739,023 - GFF2060 0.64 +0.7 739,448 + -2.0 739,448 + -0.6 739,448 + -0.7 739,448 + -0.4 739,448 + +0.2 739,448 + +0.7 739,449 - -1.4 739,449 - -1.1 739,496 + +0.0 739,496 + +0.2 739,497 - +0.8 739,550 + +0.9 739,550 + +0.3 739,551 - +1.1 739,767 + GFF2061 0.14 +0.0 739,767 + GFF2061 0.14 +0.3 740,063 + GFF2061 0.33 +0.0 740,064 - GFF2061 0.33 +0.5 740,102 + GFF2061 0.36 +0.8 740,102 + GFF2061 0.36 -0.4 740,198 + GFF2061 0.42 -1.0 740,199 - GFF2061 0.42 -0.1 740,199 - GFF2061 0.42 -1.6 740,466 + GFF2061 0.60 -0.0 740,466 + GFF2061 0.60 -1.3 740,467 - GFF2061 0.60 +0.4 740,543 + GFF2061 0.65 +0.6 740,544 - GFF2061 0.65 +0.8 740,604 - GFF2061 0.69 -0.2 740,690 + GFF2061 0.75 -0.5 740,691 - GFF2061 0.75 -0.1 741,044 + +0.4 741,045 - -0.3 741,054 + -0.8 741,265 + GFF2062 0.39 +1.1 741,266 - GFF2062 0.39 +0.7 741,266 - GFF2062 0.39 +0.2 741,266 - GFF2062 0.39 -1.8 741,376 + GFF2062 0.61 -1.2 741,376 + GFF2062 0.61 +1.8 741,376 + GFF2062 0.61 +0.7 741,377 - GFF2062 0.61 -1.0 741,377 - GFF2062 0.61 -0.6 741,377 - GFF2062 0.61 -0.0 741,454 + GFF2062 0.76 +0.3 741,455 - GFF2062 0.76 -0.8 741,455 - GFF2062 0.76 +0.2 741,455 - GFF2062 0.76 -0.8 741,602 + -0.6 741,727 + +0.1 741,830 + GFF2063 0.13 -0.1 741,831 + GFF2063 0.13 +0.3 741,920 + GFF2063 0.23 +0.6 742,015 + GFF2063 0.33 -0.6
Or see this region's nucleotide sequence