Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2058 and GFF2059 overlap by 1 nucleotides GFF2059 and GFF2060 overlap by 4 nucleotides GFF2060 and GFF2061 are separated by 9 nucleotides
GFF2058 - Formate hydrogenlyase subunit 4, at 736,426 to 737,373
GFF2058
GFF2059 - hypothetical protein, at 737,373 to 738,098
GFF2059
GFF2060 - NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic, at 738,095 to 739,552
GFF2060
GFF2061 - Formate hydrogenlyase subunit 5, at 739,562 to 741,064
GFF2061
Position (kb) 738
739
740 Strain fitness (log2 ratio) -2
-1
0
1
2 at 737.218 kb on + strand, within GFF2058 at 737.218 kb on + strand, within GFF2058 at 737.496 kb on + strand, within GFF2059 at 737.497 kb on - strand, within GFF2059 at 737.512 kb on - strand, within GFF2059 at 737.512 kb on - strand, within GFF2059 at 737.601 kb on + strand, within GFF2059 at 737.601 kb on + strand, within GFF2059 at 737.601 kb on + strand, within GFF2059 at 737.601 kb on + strand, within GFF2059 at 737.601 kb on + strand, within GFF2059 at 737.601 kb on + strand, within GFF2059 at 737.601 kb on + strand, within GFF2059 at 737.602 kb on - strand, within GFF2059 at 737.602 kb on - strand, within GFF2059 at 737.602 kb on - strand, within GFF2059 at 737.602 kb on - strand, within GFF2059 at 738.120 kb on + strand at 738.120 kb on + strand at 738.188 kb on + strand at 738.189 kb on - strand at 738.419 kb on + strand, within GFF2060 at 738.420 kb on - strand, within GFF2060 at 738.420 kb on - strand, within GFF2060 at 738.431 kb on + strand, within GFF2060 at 738.432 kb on - strand, within GFF2060 at 738.432 kb on - strand, within GFF2060 at 738.432 kb on - strand, within GFF2060 at 738.432 kb on - strand, within GFF2060 at 738.578 kb on + strand, within GFF2060 at 738.635 kb on + strand, within GFF2060 at 738.635 kb on + strand, within GFF2060 at 738.635 kb on + strand, within GFF2060 at 738.636 kb on - strand, within GFF2060 at 738.636 kb on - strand, within GFF2060 at 738.771 kb on - strand, within GFF2060 at 738.989 kb on + strand, within GFF2060 at 739.023 kb on - strand, within GFF2060 at 739.448 kb on + strand at 739.448 kb on + strand at 739.448 kb on + strand at 739.448 kb on + strand at 739.448 kb on + strand at 739.448 kb on + strand at 739.449 kb on - strand at 739.449 kb on - strand at 739.496 kb on + strand at 739.496 kb on + strand at 739.497 kb on - strand at 739.550 kb on + strand at 739.550 kb on + strand at 739.551 kb on - strand at 739.767 kb on + strand, within GFF2061 at 739.767 kb on + strand, within GFF2061 at 740.063 kb on + strand, within GFF2061 at 740.064 kb on - strand, within GFF2061 at 740.102 kb on + strand, within GFF2061 at 740.102 kb on + strand, within GFF2061 at 740.198 kb on + strand, within GFF2061 at 740.199 kb on - strand, within GFF2061 at 740.199 kb on - strand, within GFF2061 at 740.466 kb on + strand, within GFF2061 at 740.466 kb on + strand, within GFF2061 at 740.467 kb on - strand, within GFF2061 at 740.543 kb on + strand, within GFF2061 at 740.544 kb on - strand, within GFF2061
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 737,218 + GFF2058 0.84 +0.2 737,218 + GFF2058 0.84 +0.2 737,496 + GFF2059 0.17 +1.0 737,497 - GFF2059 0.17 +0.4 737,512 - GFF2059 0.19 +0.2 737,512 - GFF2059 0.19 -0.7 737,601 + GFF2059 0.31 -1.9 737,601 + GFF2059 0.31 +0.2 737,601 + GFF2059 0.31 -0.2 737,601 + GFF2059 0.31 +0.8 737,601 + GFF2059 0.31 -0.0 737,601 + GFF2059 0.31 +0.7 737,601 + GFF2059 0.31 +1.2 737,602 - GFF2059 0.32 -1.3 737,602 - GFF2059 0.32 -0.1 737,602 - GFF2059 0.32 -0.9 737,602 - GFF2059 0.32 +1.1 738,120 + -0.9 738,120 + +0.5 738,188 + -0.7 738,189 - -0.4 738,419 + GFF2060 0.22 -0.4 738,420 - GFF2060 0.22 -0.8 738,420 - GFF2060 0.22 +1.7 738,431 + GFF2060 0.23 +0.5 738,432 - GFF2060 0.23 -0.2 738,432 - GFF2060 0.23 +0.3 738,432 - GFF2060 0.23 +0.2 738,432 - GFF2060 0.23 -0.0 738,578 + GFF2060 0.33 -0.1 738,635 + GFF2060 0.37 -1.4 738,635 + GFF2060 0.37 +0.1 738,635 + GFF2060 0.37 -0.7 738,636 - GFF2060 0.37 +2.4 738,636 - GFF2060 0.37 -0.3 738,771 - GFF2060 0.46 -1.4 738,989 + GFF2060 0.61 -0.0 739,023 - GFF2060 0.64 +0.7 739,448 + -2.0 739,448 + -0.6 739,448 + -0.7 739,448 + -0.4 739,448 + +0.2 739,448 + +0.7 739,449 - -1.4 739,449 - -1.1 739,496 + +0.0 739,496 + +0.2 739,497 - +0.8 739,550 + +0.9 739,550 + +0.3 739,551 - +1.1 739,767 + GFF2061 0.14 +0.0 739,767 + GFF2061 0.14 +0.3 740,063 + GFF2061 0.33 +0.0 740,064 - GFF2061 0.33 +0.5 740,102 + GFF2061 0.36 +0.8 740,102 + GFF2061 0.36 -0.4 740,198 + GFF2061 0.42 -1.0 740,199 - GFF2061 0.42 -0.1 740,199 - GFF2061 0.42 -1.6 740,466 + GFF2061 0.60 -0.0 740,466 + GFF2061 0.60 -1.3 740,467 - GFF2061 0.60 +0.4 740,543 + GFF2061 0.65 +0.6 740,544 - GFF2061 0.65 +0.8
Or see this region's nucleotide sequence