Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2054 and GFF2055 are separated by 152 nucleotides GFF2055 and GFF2056 are separated by 143 nucleotides GFF2056 and GFF2057 overlap by 4 nucleotides
GFF2054 - Tyrosine recombinase XerC, at 732,161 to 733,162
GFF2054
GFF2055 - hypothetical protein, at 733,315 to 733,998
GFF2055
GFF2056 - hypothetical protein, at 734,142 to 734,411
GFF2056
GFF2057 - Hydrogenase-4 component B, at 734,408 to 736,429
GFF2057
Position (kb) 734
735 Strain fitness (log2 ratio) -2
-1
0
1
2 at 733.296 kb on + strand at 733.296 kb on + strand at 733.586 kb on + strand, within GFF2055 at 733.675 kb on + strand, within GFF2055 at 733.711 kb on + strand, within GFF2055 at 733.712 kb on - strand, within GFF2055 at 733.739 kb on - strand, within GFF2055 at 734.069 kb on - strand at 734.071 kb on + strand at 734.100 kb on + strand at 734.100 kb on + strand at 734.101 kb on - strand at 734.101 kb on - strand at 734.525 kb on + strand at 734.526 kb on - strand at 734.526 kb on - strand at 734.526 kb on - strand at 734.708 kb on + strand, within GFF2057 at 734.720 kb on + strand, within GFF2057 at 734.813 kb on + strand, within GFF2057 at 734.814 kb on - strand, within GFF2057 at 734.814 kb on - strand, within GFF2057 at 734.814 kb on - strand, within GFF2057 at 734.814 kb on - strand, within GFF2057 at 734.912 kb on + strand, within GFF2057 at 734.913 kb on - strand, within GFF2057 at 734.913 kb on - strand, within GFF2057 at 734.913 kb on - strand, within GFF2057 at 734.913 kb on - strand, within GFF2057 at 734.913 kb on - strand, within GFF2057 at 735.305 kb on - strand, within GFF2057 at 735.340 kb on + strand, within GFF2057
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 733,296 + -0.1 733,296 + +1.7 733,586 + GFF2055 0.40 -0.0 733,675 + GFF2055 0.53 -0.8 733,711 + GFF2055 0.58 +0.7 733,712 - GFF2055 0.58 -0.8 733,739 - GFF2055 0.62 -0.2 734,069 - -0.2 734,071 + +0.2 734,100 + -0.5 734,100 + +0.2 734,101 - +0.9 734,101 - +0.6 734,525 + +0.1 734,526 - +1.1 734,526 - +0.4 734,526 - +0.5 734,708 + GFF2057 0.15 -1.1 734,720 + GFF2057 0.15 -0.3 734,813 + GFF2057 0.20 -0.6 734,814 - GFF2057 0.20 -1.0 734,814 - GFF2057 0.20 +2.0 734,814 - GFF2057 0.20 -0.3 734,814 - GFF2057 0.20 -0.0 734,912 + GFF2057 0.25 -0.5 734,913 - GFF2057 0.25 -0.2 734,913 - GFF2057 0.25 +0.8 734,913 - GFF2057 0.25 -0.4 734,913 - GFF2057 0.25 -0.2 734,913 - GFF2057 0.25 -0.3 735,305 - GFF2057 0.44 -2.6 735,340 + GFF2057 0.46 +1.2
Or see this region's nucleotide sequence