Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2052 and GFF2053 are separated by 147 nucleotides GFF2053 and GFF2054 overlap by 4 nucleotides GFF2054 and GFF2055 are separated by 152 nucleotides GFF2055 and GFF2056 are separated by 143 nucleotides
GFF2052 - Sensor histidine kinase RcsC, at 729,063 to 731,582
GFF2052
GFF2053 - hypothetical protein, at 731,730 to 732,164
GFF2053
GFF2054 - Tyrosine recombinase XerC, at 732,161 to 733,162
GFF2054
GFF2055 - hypothetical protein, at 733,315 to 733,998
GFF2055
GFF2056 - hypothetical protein, at 734,142 to 734,411
GFF2056
Position (kb) 732
733
734 Strain fitness (log2 ratio) -1
0
1
2 at 731.671 kb on - strand at 731.731 kb on + strand at 731.738 kb on - strand at 731.788 kb on + strand, within GFF2053 at 731.789 kb on - strand, within GFF2053 at 731.789 kb on - strand, within GFF2053 at 731.789 kb on - strand, within GFF2053 at 731.791 kb on + strand, within GFF2053 at 731.792 kb on - strand, within GFF2053 at 731.792 kb on - strand, within GFF2053 at 731.830 kb on + strand, within GFF2053 at 731.830 kb on + strand, within GFF2053 at 732.041 kb on - strand, within GFF2053 at 732.085 kb on + strand, within GFF2053 at 732.246 kb on + strand at 733.018 kb on - strand, within GFF2054 at 733.018 kb on - strand, within GFF2054 at 733.296 kb on + strand at 733.296 kb on + strand at 733.586 kb on + strand, within GFF2055 at 733.675 kb on + strand, within GFF2055 at 733.711 kb on + strand, within GFF2055 at 733.712 kb on - strand, within GFF2055 at 733.739 kb on - strand, within GFF2055 at 734.069 kb on - strand at 734.071 kb on + strand at 734.100 kb on + strand at 734.100 kb on + strand at 734.101 kb on - strand at 734.101 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 731,671 - +0.5 731,731 + +0.9 731,738 - -0.2 731,788 + GFF2053 0.13 -0.2 731,789 - GFF2053 0.14 +0.6 731,789 - GFF2053 0.14 -0.7 731,789 - GFF2053 0.14 +0.4 731,791 + GFF2053 0.14 -0.4 731,792 - GFF2053 0.14 -0.1 731,792 - GFF2053 0.14 -0.9 731,830 + GFF2053 0.23 -0.2 731,830 + GFF2053 0.23 -1.1 732,041 - GFF2053 0.71 -0.8 732,085 + GFF2053 0.82 +0.7 732,246 + +2.4 733,018 - GFF2054 0.86 +0.2 733,018 - GFF2054 0.86 +2.1 733,296 + -0.1 733,296 + +1.7 733,586 + GFF2055 0.40 -0.0 733,675 + GFF2055 0.53 -0.8 733,711 + GFF2055 0.58 +0.7 733,712 - GFF2055 0.58 -0.8 733,739 - GFF2055 0.62 -0.2 734,069 - -0.2 734,071 + +0.2 734,100 + -0.5 734,100 + +0.2 734,101 - +0.9 734,101 - +0.6
Or see this region's nucleotide sequence