Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2049 and GFF2050 are separated by 98 nucleotides GFF2050 and GFF2051 overlap by 4 nucleotides GFF2051 and GFF2052 overlap by 4 nucleotides
GFF2049 - hypothetical protein, at 723,570 to 726,617
GFF2049
GFF2050 - N-acetylmuramate alpha-1-phosphate uridylyltransferase, at 726,716 to 727,498
GFF2050
GFF2051 - hypothetical protein, at 727,495 to 729,066
GFF2051
GFF2052 - Sensor histidine kinase RcsC, at 729,063 to 731,582
GFF2052
Position (kb) 727
728
729
730 Strain fitness (log2 ratio) -1
0
1
2 at 726.707 kb on + strand at 726.807 kb on + strand, within GFF2050 at 726.912 kb on + strand, within GFF2050 at 726.994 kb on - strand, within GFF2050 at 727.115 kb on - strand, within GFF2050 at 727.532 kb on + strand at 727.532 kb on + strand at 727.533 kb on - strand at 727.533 kb on - strand at 727.533 kb on - strand at 727.583 kb on + strand at 727.613 kb on + strand at 727.613 kb on + strand at 727.614 kb on - strand at 727.614 kb on - strand at 727.754 kb on + strand, within GFF2051 at 727.829 kb on + strand, within GFF2051 at 727.830 kb on - strand, within GFF2051 at 727.925 kb on + strand, within GFF2051 at 727.926 kb on - strand, within GFF2051 at 728.466 kb on - strand, within GFF2051
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 726,707 + +0.3 726,807 + GFF2050 0.12 -0.2 726,912 + GFF2050 0.25 -0.2 726,994 - GFF2050 0.36 -0.2 727,115 - GFF2050 0.51 +0.4 727,532 + +1.4 727,532 + +1.0 727,533 - -0.1 727,533 - +0.1 727,533 - +0.1 727,583 + +2.2 727,613 + +2.6 727,613 + +1.1 727,614 - +0.5 727,614 - +1.0 727,754 + GFF2051 0.16 +0.5 727,829 + GFF2051 0.21 -0.8 727,830 - GFF2051 0.21 +1.6 727,925 + GFF2051 0.27 +2.7 727,926 - GFF2051 0.27 +0.2 728,466 - GFF2051 0.62 +1.7
Or see this region's nucleotide sequence