Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2048 and GFF2049 overlap by 4 nucleotides GFF2049 and GFF2050 are separated by 98 nucleotides GFF2050 and GFF2051 overlap by 4 nucleotides
GFF2048 - RecBCD enzyme subunit RecB, at 720,055 to 723,573
GFF2048
GFF2049 - hypothetical protein, at 723,570 to 726,617
GFF2049
GFF2050 - N-acetylmuramate alpha-1-phosphate uridylyltransferase, at 726,716 to 727,498
GFF2050
GFF2051 - hypothetical protein, at 727,495 to 729,066
GFF2051
Position (kb) 723
724
725
726
727 Strain fitness (log2 ratio) -1
0
1
2 at 723.383 kb on + strand at 723.452 kb on - strand at 723.811 kb on + strand at 723.812 kb on - strand at 723.812 kb on - strand at 724.343 kb on - strand, within GFF2049 at 726.707 kb on + strand at 726.807 kb on + strand, within GFF2050 at 726.912 kb on + strand, within GFF2050 at 726.994 kb on - strand, within GFF2050 at 727.115 kb on - strand, within GFF2050 at 727.532 kb on + strand at 727.532 kb on + strand at 727.533 kb on - strand at 727.533 kb on - strand at 727.533 kb on - strand at 727.583 kb on + strand at 727.613 kb on + strand at 727.613 kb on + strand at 727.614 kb on - strand at 727.614 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 723,383 + +0.4 723,452 - +1.0 723,811 + +1.4 723,812 - -0.4 723,812 - -0.4 724,343 - GFF2049 0.25 +0.4 726,707 + +0.3 726,807 + GFF2050 0.12 -0.2 726,912 + GFF2050 0.25 -0.2 726,994 - GFF2050 0.36 -0.2 727,115 - GFF2050 0.51 +0.4 727,532 + +1.4 727,532 + +1.0 727,533 - -0.1 727,533 - +0.1 727,533 - +0.1 727,583 + +2.2 727,613 + +2.6 727,613 + +1.1 727,614 - +0.5 727,614 - +1.0
Or see this region's nucleotide sequence