Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2045 and GFF2046 are separated by 142 nucleotides GFF2046 and GFF2047 are separated by 75 nucleotides GFF2047 and GFF2048 are separated by 85 nucleotides GFF2048 and GFF2049 overlap by 4 nucleotides
GFF2045 - tRNA pseudouridine synthase A, at 718,343 to 719,080
GFF2045
GFF2046 - hypothetical protein, at 719,223 to 719,573
GFF2046
GFF2047 - Thioredoxin C-1, at 719,649 to 719,969
GFF2047
GFF2048 - RecBCD enzyme subunit RecB, at 720,055 to 723,573
GFF2048
GFF2049 - hypothetical protein, at 723,570 to 726,617
GFF2049
Position (kb) 720
721
722
723
724 Strain fitness (log2 ratio) -2
-1
0
1 at 719.057 kb on + strand at 719.228 kb on + strand at 719.237 kb on + strand at 719.982 kb on - strand at 720.023 kb on - strand at 720.023 kb on - strand at 720.023 kb on - strand at 720.023 kb on - strand at 720.168 kb on - strand at 723.383 kb on + strand at 723.452 kb on - strand at 723.811 kb on + strand at 723.812 kb on - strand at 723.812 kb on - strand at 724.343 kb on - strand, within GFF2049
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 719,057 + -0.6 719,228 + -0.8 719,237 + +0.2 719,982 - -2.3 720,023 - -1.2 720,023 - +0.1 720,023 - +0.1 720,023 - +0.5 720,168 - +0.4 723,383 + +0.4 723,452 - +1.0 723,811 + +1.4 723,812 - -0.4 723,812 - -0.4 724,343 - GFF2049 0.25 +0.4
Or see this region's nucleotide sequence