Strain Fitness in Xanthobacter sp. DMC5 around GFF2044

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2042 and GFF2043 are separated by 100 nucleotidesGFF2043 and GFF2044 are separated by 37 nucleotidesGFF2044 and GFF2045 are separated by 16 nucleotidesGFF2045 and GFF2046 are separated by 142 nucleotides GFF2042 - hypothetical protein, at 715,592 to 716,746 GFF2042 GFF2043 - Peptide deformylase, at 716,847 to 717,365 GFF2043 GFF2044 - Methionyl-tRNA formyltransferase, at 717,403 to 718,326 GFF2044 GFF2045 - tRNA pseudouridine synthase A, at 718,343 to 719,080 GFF2045 GFF2046 - hypothetical protein, at 719,223 to 719,573 GFF2046 Position (kb) 717 718 719Strain fitness (log2 ratio) -1 0 1at 718.325 kb on - strandat 718.325 kb on - strandat 718.371 kb on - strandat 718.673 kb on + strand, within GFF2045at 718.674 kb on - strand, within GFF2045at 718.869 kb on + strand, within GFF2045at 718.870 kb on - strand, within GFF2045at 719.057 kb on + strandat 719.228 kb on + strandat 719.237 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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718,325 - +0.2
718,325 - +0.7
718,371 - -0.5
718,673 + GFF2045 0.45 -0.8
718,674 - GFF2045 0.45 +1.6
718,869 + GFF2045 0.71 +1.2
718,870 - GFF2045 0.71 -0.4
719,057 + -0.6
719,228 + -0.8
719,237 + +0.2

Or see this region's nucleotide sequence