Strain Fitness in Xanthobacter sp. DMC5 around GFF2043

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2042 and GFF2043 are separated by 100 nucleotidesGFF2043 and GFF2044 are separated by 37 nucleotidesGFF2044 and GFF2045 are separated by 16 nucleotides GFF2042 - hypothetical protein, at 715,592 to 716,746 GFF2042 GFF2043 - Peptide deformylase, at 716,847 to 717,365 GFF2043 GFF2044 - Methionyl-tRNA formyltransferase, at 717,403 to 718,326 GFF2044 GFF2045 - tRNA pseudouridine synthase A, at 718,343 to 719,080 GFF2045 Position (kb) 716 717 718Strain fitness (log2 ratio) -1 0 1at 715.944 kb on + strand, within GFF2042at 715.944 kb on + strand, within GFF2042at 715.944 kb on + strand, within GFF2042at 716.004 kb on + strand, within GFF2042at 716.023 kb on - strand, within GFF2042at 718.325 kb on - strandat 718.325 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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715,944 + GFF2042 0.30 -0.3
715,944 + GFF2042 0.30 -0.3
715,944 + GFF2042 0.30 +0.4
716,004 + GFF2042 0.36 +1.7
716,023 - GFF2042 0.37 -1.0
718,325 - +0.2
718,325 - +0.7

Or see this region's nucleotide sequence