Strain Fitness in Xanthobacter sp. DMC5 around GFF2032

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2030 and GFF2031 are separated by 31 nucleotidesGFF2031 and GFF2032 are separated by 97 nucleotidesGFF2032 and GFF2033 are separated by 2 nucleotides GFF2030 - Glyoxylate/hydroxypyruvate reductase A, at 703,983 to 704,909 GFF2030 GFF2031 - hypothetical protein, at 704,941 to 705,294 GFF2031 GFF2032 - hypothetical protein, at 705,392 to 706,186 GFF2032 GFF2033 - hypothetical protein, at 706,189 to 707,061 GFF2033 Position (kb) 705 706 707Strain fitness (log2 ratio) -2 -1 0 1 2at 704.533 kb on + strand, within GFF2030at 704.573 kb on - strand, within GFF2030at 704.573 kb on - strand, within GFF2030at 704.573 kb on - strand, within GFF2030at 704.573 kb on - strand, within GFF2030at 704.573 kb on - strand, within GFF2030at 704.573 kb on - strand, within GFF2030at 704.617 kb on + strand, within GFF2030at 704.617 kb on + strand, within GFF2030at 704.617 kb on + strand, within GFF2030at 704.617 kb on + strand, within GFF2030at 704.617 kb on + strand, within GFF2030at 704.617 kb on + strand, within GFF2030at 704.618 kb on - strand, within GFF2030at 704.618 kb on - strand, within GFF2030at 704.618 kb on - strand, within GFF2030at 704.618 kb on - strand, within GFF2030at 704.721 kb on + strand, within GFF2030at 704.721 kb on + strand, within GFF2030at 704.722 kb on - strand, within GFF2030at 704.722 kb on - strand, within GFF2030at 704.722 kb on - strand, within GFF2030at 704.896 kb on + strandat 704.896 kb on + strandat 704.896 kb on + strandat 704.896 kb on + strandat 704.897 kb on - strandat 704.897 kb on - strandat 705.095 kb on + strand, within GFF2031at 705.096 kb on - strand, within GFF2031at 705.201 kb on - strand, within GFF2031at 705.567 kb on + strand, within GFF2032at 705.600 kb on - strand, within GFF2032at 705.825 kb on + strand, within GFF2032at 705.825 kb on + strand, within GFF2032at 705.825 kb on + strand, within GFF2032at 705.826 kb on - strand, within GFF2032at 705.826 kb on - strand, within GFF2032at 705.826 kb on - strand, within GFF2032at 705.933 kb on + strand, within GFF2032at 705.933 kb on + strand, within GFF2032at 706.032 kb on + strand, within GFF2032at 706.033 kb on - strand, within GFF2032at 706.033 kb on - strand, within GFF2032at 706.033 kb on - strand, within GFF2032at 706.033 kb on - strand, within GFF2032at 706.033 kb on - strand, within GFF2032at 706.042 kb on - strand, within GFF2032at 706.304 kb on + strand, within GFF2033at 706.304 kb on + strand, within GFF2033at 706.305 kb on - strand, within GFF2033at 706.305 kb on - strand, within GFF2033at 706.343 kb on + strand, within GFF2033at 706.343 kb on + strand, within GFF2033at 706.343 kb on + strand, within GFF2033at 706.343 kb on + strand, within GFF2033at 706.344 kb on - strand, within GFF2033at 706.344 kb on - strand, within GFF2033at 706.344 kb on - strand, within GFF2033at 706.344 kb on - strand, within GFF2033at 706.344 kb on - strand, within GFF2033at 706.379 kb on + strand, within GFF2033at 706.379 kb on + strand, within GFF2033at 706.379 kb on + strand, within GFF2033at 706.379 kb on + strand, within GFF2033at 706.379 kb on + strand, within GFF2033at 706.380 kb on - strand, within GFF2033at 706.466 kb on + strand, within GFF2033at 706.466 kb on + strand, within GFF2033at 706.466 kb on + strand, within GFF2033at 706.536 kb on - strand, within GFF2033at 706.691 kb on + strand, within GFF2033at 706.691 kb on + strand, within GFF2033at 706.691 kb on + strand, within GFF2033at 706.692 kb on - strand, within GFF2033at 706.692 kb on - strand, within GFF2033at 706.781 kb on + strand, within GFF2033at 706.781 kb on + strand, within GFF2033at 706.781 kb on + strand, within GFF2033at 706.781 kb on + strand, within GFF2033at 706.781 kb on + strand, within GFF2033at 706.781 kb on + strand, within GFF2033at 706.782 kb on - strand, within GFF2033at 706.782 kb on - strand, within GFF2033at 706.862 kb on + strand, within GFF2033at 706.889 kb on + strand, within GFF2033at 706.889 kb on + strand, within GFF2033at 706.889 kb on + strand, within GFF2033

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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704,533 + GFF2030 0.59 +0.9
704,573 - GFF2030 0.64 +0.5
704,573 - GFF2030 0.64 -0.7
704,573 - GFF2030 0.64 +0.6
704,573 - GFF2030 0.64 +0.7
704,573 - GFF2030 0.64 +0.3
704,573 - GFF2030 0.64 +0.1
704,617 + GFF2030 0.68 -0.8
704,617 + GFF2030 0.68 +0.2
704,617 + GFF2030 0.68 +2.3
704,617 + GFF2030 0.68 -0.9
704,617 + GFF2030 0.68 -0.3
704,617 + GFF2030 0.68 -0.8
704,618 - GFF2030 0.69 +0.2
704,618 - GFF2030 0.69 +0.1
704,618 - GFF2030 0.69 -0.7
704,618 - GFF2030 0.69 -1.4
704,721 + GFF2030 0.80 +0.1
704,721 + GFF2030 0.80 +0.1
704,722 - GFF2030 0.80 +1.2
704,722 - GFF2030 0.80 +0.7
704,722 - GFF2030 0.80 -0.6
704,896 + -0.1
704,896 + -1.1
704,896 + +1.2
704,896 + +0.5
704,897 - +0.1
704,897 - +0.9
705,095 + GFF2031 0.44 +0.6
705,096 - GFF2031 0.44 +0.1
705,201 - GFF2031 0.73 -0.9
705,567 + GFF2032 0.22 +0.5
705,600 - GFF2032 0.26 -0.2
705,825 + GFF2032 0.54 -0.7
705,825 + GFF2032 0.54 -1.4
705,825 + GFF2032 0.54 -0.2
705,826 - GFF2032 0.55 -0.4
705,826 - GFF2032 0.55 -0.0
705,826 - GFF2032 0.55 -1.1
705,933 + GFF2032 0.68 +0.5
705,933 + GFF2032 0.68 +1.2
706,032 + GFF2032 0.81 -0.1
706,033 - GFF2032 0.81 -2.0
706,033 - GFF2032 0.81 -0.4
706,033 - GFF2032 0.81 +0.4
706,033 - GFF2032 0.81 +0.2
706,033 - GFF2032 0.81 +0.0
706,042 - GFF2032 0.82 -1.2
706,304 + GFF2033 0.13 +0.9
706,304 + GFF2033 0.13 +1.0
706,305 - GFF2033 0.13 -0.0
706,305 - GFF2033 0.13 -0.4
706,343 + GFF2033 0.18 -1.7
706,343 + GFF2033 0.18 +0.4
706,343 + GFF2033 0.18 -0.2
706,343 + GFF2033 0.18 -0.6
706,344 - GFF2033 0.18 -0.4
706,344 - GFF2033 0.18 -0.7
706,344 - GFF2033 0.18 -1.2
706,344 - GFF2033 0.18 +0.2
706,344 - GFF2033 0.18 +0.5
706,379 + GFF2033 0.22 +0.5
706,379 + GFF2033 0.22 +0.7
706,379 + GFF2033 0.22 +0.3
706,379 + GFF2033 0.22 -0.1
706,379 + GFF2033 0.22 -0.5
706,380 - GFF2033 0.22 -1.3
706,466 + GFF2033 0.32 +0.2
706,466 + GFF2033 0.32 -0.8
706,466 + GFF2033 0.32 +0.3
706,536 - GFF2033 0.40 -0.8
706,691 + GFF2033 0.58 -0.3
706,691 + GFF2033 0.58 -0.2
706,691 + GFF2033 0.58 +1.0
706,692 - GFF2033 0.58 -0.3
706,692 - GFF2033 0.58 +0.4
706,781 + GFF2033 0.68 -1.2
706,781 + GFF2033 0.68 +0.4
706,781 + GFF2033 0.68 -0.1
706,781 + GFF2033 0.68 -0.6
706,781 + GFF2033 0.68 +1.3
706,781 + GFF2033 0.68 +0.6
706,782 - GFF2033 0.68 +0.3
706,782 - GFF2033 0.68 -0.4
706,862 + GFF2033 0.77 +0.0
706,889 + GFF2033 0.80 +0.4
706,889 + GFF2033 0.80 -0.5
706,889 + GFF2033 0.80 +1.1

Or see this region's nucleotide sequence