Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2029 and GFF2030 are separated by 12 nucleotides GFF2030 and GFF2031 are separated by 31 nucleotides GFF2031 and GFF2032 are separated by 97 nucleotides
GFF2029 - Glutarate-semialdehyde dehydrogenase, at 702,477 to 703,970
GFF2029
GFF2030 - Glyoxylate/hydroxypyruvate reductase A, at 703,983 to 704,909
GFF2030
GFF2031 - hypothetical protein, at 704,941 to 705,294
GFF2031
GFF2032 - hypothetical protein, at 705,392 to 706,186
GFF2032
Position (kb) 703
704
705 Strain fitness (log2 ratio) -1
0
1
2 at 703.567 kb on + strand, within GFF2029 at 703.988 kb on - strand at 704.533 kb on + strand, within GFF2030 at 704.573 kb on - strand, within GFF2030 at 704.573 kb on - strand, within GFF2030 at 704.573 kb on - strand, within GFF2030 at 704.573 kb on - strand, within GFF2030 at 704.573 kb on - strand, within GFF2030 at 704.573 kb on - strand, within GFF2030 at 704.617 kb on + strand, within GFF2030 at 704.617 kb on + strand, within GFF2030 at 704.617 kb on + strand, within GFF2030 at 704.617 kb on + strand, within GFF2030 at 704.617 kb on + strand, within GFF2030 at 704.617 kb on + strand, within GFF2030 at 704.618 kb on - strand, within GFF2030 at 704.618 kb on - strand, within GFF2030 at 704.618 kb on - strand, within GFF2030 at 704.618 kb on - strand, within GFF2030 at 704.721 kb on + strand, within GFF2030 at 704.721 kb on + strand, within GFF2030 at 704.722 kb on - strand, within GFF2030 at 704.722 kb on - strand, within GFF2030 at 704.722 kb on - strand, within GFF2030 at 704.896 kb on + strand at 704.896 kb on + strand at 704.896 kb on + strand at 704.896 kb on + strand at 704.897 kb on - strand at 704.897 kb on - strand at 705.095 kb on + strand, within GFF2031 at 705.096 kb on - strand, within GFF2031 at 705.201 kb on - strand, within GFF2031 at 705.567 kb on + strand, within GFF2032 at 705.600 kb on - strand, within GFF2032 at 705.825 kb on + strand, within GFF2032 at 705.825 kb on + strand, within GFF2032 at 705.825 kb on + strand, within GFF2032 at 705.826 kb on - strand, within GFF2032 at 705.826 kb on - strand, within GFF2032 at 705.826 kb on - strand, within GFF2032
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 703,567 + GFF2029 0.73 +2.5 703,988 - -0.9 704,533 + GFF2030 0.59 +0.9 704,573 - GFF2030 0.64 +0.5 704,573 - GFF2030 0.64 -0.7 704,573 - GFF2030 0.64 +0.6 704,573 - GFF2030 0.64 +0.7 704,573 - GFF2030 0.64 +0.3 704,573 - GFF2030 0.64 +0.1 704,617 + GFF2030 0.68 -0.8 704,617 + GFF2030 0.68 +0.2 704,617 + GFF2030 0.68 +2.3 704,617 + GFF2030 0.68 -0.9 704,617 + GFF2030 0.68 -0.3 704,617 + GFF2030 0.68 -0.8 704,618 - GFF2030 0.69 +0.2 704,618 - GFF2030 0.69 +0.1 704,618 - GFF2030 0.69 -0.7 704,618 - GFF2030 0.69 -1.4 704,721 + GFF2030 0.80 +0.1 704,721 + GFF2030 0.80 +0.1 704,722 - GFF2030 0.80 +1.2 704,722 - GFF2030 0.80 +0.7 704,722 - GFF2030 0.80 -0.6 704,896 + -0.1 704,896 + -1.1 704,896 + +1.2 704,896 + +0.5 704,897 - +0.1 704,897 - +0.9 705,095 + GFF2031 0.44 +0.6 705,096 - GFF2031 0.44 +0.1 705,201 - GFF2031 0.73 -0.9 705,567 + GFF2032 0.22 +0.5 705,600 - GFF2032 0.26 -0.2 705,825 + GFF2032 0.54 -0.7 705,825 + GFF2032 0.54 -1.4 705,825 + GFF2032 0.54 -0.2 705,826 - GFF2032 0.55 -0.4 705,826 - GFF2032 0.55 -0.0 705,826 - GFF2032 0.55 -1.1
Or see this region's nucleotide sequence