Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF201 and GFF202 are separated by 155 nucleotides GFF202 and GFF203 are separated by 78 nucleotides GFF203 and GFF204 are separated by 68 nucleotides GFF204 and GFF205 are separated by 95 nucleotides
GFF201 - hypothetical protein, at 211,916 to 213,325
GFF201
GFF202 - hypothetical protein, at 213,481 to 214,005
GFF202
GFF203 - Serine acetyltransferase, at 214,084 to 214,968
GFF203
GFF204 - hypothetical protein, at 215,037 to 215,423
GFF204
GFF205 - 3-oxoadipate enol-lactonase 2, at 215,519 to 216,292
GFF205
Position (kb) 214
215 Strain fitness (log2 ratio) -2
-1
0
1
2 at 213.184 kb on + strand, within GFF201 at 213.184 kb on + strand, within GFF201 at 213.185 kb on - strand at 213.185 kb on - strand at 213.452 kb on - strand at 213.452 kb on - strand at 213.467 kb on - strand at 213.545 kb on - strand, within GFF202 at 214.047 kb on + strand at 214.047 kb on + strand at 214.047 kb on + strand at 214.047 kb on + strand at 215.005 kb on - strand at 215.005 kb on - strand at 215.005 kb on - strand at 215.031 kb on + strand at 215.071 kb on - strand at 215.072 kb on + strand at 215.072 kb on + strand at 215.206 kb on - strand, within GFF204 at 215.247 kb on + strand, within GFF204 at 215.323 kb on - strand, within GFF204 at 215.481 kb on + strand at 215.718 kb on - strand, within GFF205 at 215.718 kb on - strand, within GFF205 at 215.718 kb on - strand, within GFF205 at 215.718 kb on - strand, within GFF205 at 215.718 kb on - strand, within GFF205
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 213,184 + GFF201 0.90 +0.6 213,184 + GFF201 0.90 +0.0 213,185 - +0.3 213,185 - +0.3 213,452 - -0.1 213,452 - +0.1 213,467 - +0.1 213,545 - GFF202 0.12 -1.1 214,047 + -1.3 214,047 + +0.5 214,047 + -0.3 214,047 + +0.4 215,005 - +2.0 215,005 - +0.0 215,005 - -0.4 215,031 + -0.3 215,071 - +0.4 215,072 + -0.6 215,072 + +0.1 215,206 - GFF204 0.44 -1.9 215,247 + GFF204 0.54 -1.5 215,323 - GFF204 0.74 -2.1 215,481 + +0.1 215,718 - GFF205 0.26 -0.7 215,718 - GFF205 0.26 +1.0 215,718 - GFF205 0.26 -0.6 215,718 - GFF205 0.26 -0.4 215,718 - GFF205 0.26 +0.5
Or see this region's nucleotide sequence