Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2024 and GFF2025 are separated by 114 nucleotides GFF2025 and GFF2026 overlap by 11 nucleotides GFF2026 and GFF2027 are separated by 80 nucleotides
GFF2024 - hypothetical protein, at 696,870 to 697,937
GFF2024
GFF2025 - Sensor histidine kinase RegB, at 698,052 to 699,359
GFF2025
GFF2026 - Photosynthetic apparatus regulatory protein RegA, at 699,349 to 699,882
GFF2026
GFF2027 - Putrescine--pyruvate aminotransferase, at 699,963 to 701,381
GFF2027
Position (kb) 698
699
700 Strain fitness (log2 ratio) -2
-1
0
1
2 at 697.062 kb on + strand, within GFF2024 at 697.062 kb on + strand, within GFF2024 at 697.063 kb on - strand, within GFF2024 at 697.063 kb on - strand, within GFF2024 at 697.146 kb on + strand, within GFF2024 at 697.146 kb on + strand, within GFF2024 at 697.146 kb on + strand, within GFF2024 at 697.146 kb on + strand, within GFF2024 at 697.147 kb on - strand, within GFF2024 at 697.147 kb on - strand, within GFF2024 at 697.147 kb on - strand, within GFF2024 at 697.148 kb on + strand, within GFF2024 at 697.148 kb on + strand, within GFF2024 at 697.149 kb on - strand, within GFF2024 at 697.149 kb on - strand, within GFF2024 at 697.155 kb on + strand, within GFF2024 at 697.155 kb on + strand, within GFF2024 at 697.156 kb on - strand, within GFF2024 at 697.236 kb on + strand, within GFF2024 at 697.237 kb on - strand, within GFF2024 at 697.237 kb on - strand, within GFF2024 at 697.248 kb on + strand, within GFF2024 at 697.248 kb on + strand, within GFF2024 at 697.248 kb on + strand, within GFF2024 at 697.248 kb on + strand, within GFF2024 at 697.248 kb on + strand, within GFF2024 at 697.249 kb on - strand, within GFF2024 at 697.249 kb on - strand, within GFF2024 at 697.249 kb on - strand, within GFF2024 at 697.249 kb on - strand, within GFF2024 at 697.435 kb on - strand, within GFF2024 at 697.815 kb on + strand, within GFF2024 at 697.816 kb on - strand, within GFF2024 at 697.872 kb on + strand at 697.872 kb on + strand at 697.872 kb on + strand at 697.873 kb on - strand at 697.873 kb on - strand at 697.873 kb on - strand at 697.873 kb on - strand at 697.953 kb on + strand at 697.953 kb on + strand at 697.953 kb on + strand at 698.108 kb on - strand at 698.108 kb on - strand at 698.309 kb on - strand, within GFF2025 at 698.331 kb on + strand, within GFF2025 at 698.332 kb on - strand, within GFF2025 at 698.332 kb on - strand, within GFF2025 at 698.332 kb on - strand, within GFF2025 at 698.471 kb on - strand, within GFF2025 at 698.472 kb on + strand, within GFF2025 at 698.473 kb on - strand, within GFF2025 at 698.861 kb on + strand, within GFF2025 at 698.861 kb on + strand, within GFF2025 at 698.862 kb on - strand, within GFF2025 at 698.862 kb on - strand, within GFF2025 at 698.862 kb on - strand, within GFF2025 at 699.342 kb on + strand at 699.343 kb on - strand at 699.343 kb on - strand at 699.434 kb on - strand, within GFF2026 at 699.440 kb on + strand, within GFF2026 at 699.440 kb on + strand, within GFF2026 at 699.441 kb on - strand, within GFF2026 at 699.652 kb on + strand, within GFF2026 at 699.670 kb on - strand, within GFF2026 at 699.880 kb on + strand at 699.880 kb on + strand at 699.880 kb on + strand at 699.880 kb on + strand at 699.880 kb on + strand at 699.880 kb on + strand at 699.881 kb on - strand at 699.881 kb on - strand at 699.881 kb on - strand at 699.881 kb on - strand at 700.331 kb on + strand, within GFF2027 at 700.332 kb on - strand, within GFF2027 at 700.333 kb on + strand, within GFF2027
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 697,062 + GFF2024 0.18 +0.2 697,062 + GFF2024 0.18 -1.0 697,063 - GFF2024 0.18 -0.1 697,063 - GFF2024 0.18 +0.3 697,146 + GFF2024 0.26 +0.1 697,146 + GFF2024 0.26 +0.2 697,146 + GFF2024 0.26 -0.6 697,146 + GFF2024 0.26 -0.5 697,147 - GFF2024 0.26 +0.2 697,147 - GFF2024 0.26 +0.9 697,147 - GFF2024 0.26 +0.4 697,148 + GFF2024 0.26 +2.2 697,148 + GFF2024 0.26 -0.0 697,149 - GFF2024 0.26 -0.9 697,149 - GFF2024 0.26 -0.6 697,155 + GFF2024 0.27 +0.4 697,155 + GFF2024 0.27 -1.3 697,156 - GFF2024 0.27 -0.2 697,236 + GFF2024 0.34 +0.6 697,237 - GFF2024 0.34 +0.7 697,237 - GFF2024 0.34 -1.2 697,248 + GFF2024 0.35 +0.2 697,248 + GFF2024 0.35 +0.2 697,248 + GFF2024 0.35 -0.1 697,248 + GFF2024 0.35 +0.7 697,248 + GFF2024 0.35 +0.9 697,249 - GFF2024 0.35 -0.9 697,249 - GFF2024 0.35 -0.7 697,249 - GFF2024 0.35 +0.4 697,249 - GFF2024 0.35 -1.1 697,435 - GFF2024 0.53 +0.1 697,815 + GFF2024 0.88 +0.1 697,816 - GFF2024 0.89 +0.5 697,872 + +0.2 697,872 + +0.4 697,872 + +0.1 697,873 - -1.1 697,873 - -1.8 697,873 - -1.1 697,873 - -0.2 697,953 + +0.1 697,953 + +0.6 697,953 + +1.1 698,108 - -0.1 698,108 - +0.8 698,309 - GFF2025 0.20 -0.4 698,331 + GFF2025 0.21 -0.8 698,332 - GFF2025 0.21 -2.2 698,332 - GFF2025 0.21 +1.0 698,332 - GFF2025 0.21 +0.1 698,471 - GFF2025 0.32 +1.1 698,472 + GFF2025 0.32 -0.9 698,473 - GFF2025 0.32 +0.0 698,861 + GFF2025 0.62 -0.4 698,861 + GFF2025 0.62 +0.2 698,862 - GFF2025 0.62 +0.7 698,862 - GFF2025 0.62 -1.8 698,862 - GFF2025 0.62 +0.5 699,342 + -1.2 699,343 - -1.0 699,343 - +0.6 699,434 - GFF2026 0.16 -0.3 699,440 + GFF2026 0.17 -0.8 699,440 + GFF2026 0.17 +0.4 699,441 - GFF2026 0.17 -0.7 699,652 + GFF2026 0.57 +0.6 699,670 - GFF2026 0.60 +0.4 699,880 + +0.7 699,880 + -0.2 699,880 + -1.3 699,880 + +0.4 699,880 + -0.8 699,880 + -0.9 699,881 - -1.4 699,881 - -0.6 699,881 - -0.4 699,881 - -0.5 700,331 + GFF2027 0.26 -0.8 700,332 - GFF2027 0.26 -0.8 700,333 + GFF2027 0.26 -0.9
Or see this region's nucleotide sequence