Strain Fitness in Xanthobacter sp. DMC5 around GFF202

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF201 and GFF202 are separated by 155 nucleotidesGFF202 and GFF203 are separated by 78 nucleotides GFF201 - hypothetical protein, at 211,916 to 213,325 GFF201 GFF202 - hypothetical protein, at 213,481 to 214,005 GFF202 GFF203 - Serine acetyltransferase, at 214,084 to 214,968 GFF203 Position (kb) 213 214 215Strain fitness (log2 ratio) -1 0 1 2at 212.837 kb on - strand, within GFF201at 212.883 kb on - strand, within GFF201at 212.883 kb on - strand, within GFF201at 213.184 kb on + strand, within GFF201at 213.184 kb on + strand, within GFF201at 213.185 kb on - strandat 213.185 kb on - strandat 213.452 kb on - strandat 213.452 kb on - strandat 213.467 kb on - strandat 213.545 kb on - strand, within GFF202at 214.047 kb on + strandat 214.047 kb on + strandat 214.047 kb on + strandat 214.047 kb on + strandat 215.005 kb on - strandat 215.005 kb on - strandat 215.005 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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212,837 - GFF201 0.65 -1.1
212,883 - GFF201 0.69 +0.2
212,883 - GFF201 0.69 -1.1
213,184 + GFF201 0.90 +0.6
213,184 + GFF201 0.90 +0.0
213,185 - +0.3
213,185 - +0.3
213,452 - -0.1
213,452 - +0.1
213,467 - +0.1
213,545 - GFF202 0.12 -1.1
214,047 + -1.3
214,047 + +0.5
214,047 + -0.3
214,047 + +0.4
215,005 - +2.0
215,005 - +0.0
215,005 - -0.4

Or see this region's nucleotide sequence