Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2016 and GFF2017 are separated by 41 nucleotides GFF2017 and GFF2018 are separated by 292 nucleotides GFF2018 and GFF2019 are separated by 102 nucleotides
GFF2016 - HTH-type transcriptional regulator CdhR, at 688,862 to 689,797
GFF2016
GFF2017 - hypothetical protein, at 689,839 to 690,324
GFF2017
GFF2018 - Methylamine utilization protein MauG, at 690,617 to 691,771
GFF2018
GFF2019 - Cytochrome bd-I ubiquinol oxidase subunit 1, at 691,874 to 693,451
GFF2019
Position (kb) 690
691
692 Strain fitness (log2 ratio) -2
-1
0
1
2 at 689.734 kb on - strand at 689.907 kb on + strand, within GFF2017 at 689.925 kb on + strand, within GFF2017 at 689.926 kb on - strand, within GFF2017 at 690.238 kb on - strand, within GFF2017 at 690.239 kb on + strand, within GFF2017 at 690.239 kb on + strand, within GFF2017 at 690.240 kb on - strand, within GFF2017 at 690.240 kb on - strand, within GFF2017 at 690.240 kb on - strand, within GFF2017 at 690.240 kb on - strand, within GFF2017 at 690.240 kb on - strand, within GFF2017 at 690.377 kb on + strand at 690.378 kb on - strand at 690.917 kb on + strand, within GFF2018 at 690.917 kb on + strand, within GFF2018 at 690.918 kb on - strand, within GFF2018 at 690.918 kb on - strand, within GFF2018 at 690.918 kb on - strand, within GFF2018 at 691.097 kb on + strand, within GFF2018 at 691.097 kb on + strand, within GFF2018 at 691.098 kb on - strand, within GFF2018 at 691.188 kb on - strand, within GFF2018 at 691.188 kb on - strand, within GFF2018 at 691.188 kb on - strand, within GFF2018 at 691.188 kb on - strand, within GFF2018 at 691.227 kb on - strand, within GFF2018 at 691.227 kb on - strand, within GFF2018 at 691.235 kb on + strand, within GFF2018 at 691.250 kb on + strand, within GFF2018 at 691.251 kb on - strand, within GFF2018 at 691.251 kb on - strand, within GFF2018 at 691.251 kb on - strand, within GFF2018 at 691.520 kb on + strand, within GFF2018 at 691.520 kb on + strand, within GFF2018 at 691.521 kb on - strand, within GFF2018 at 691.521 kb on - strand, within GFF2018 at 691.521 kb on - strand, within GFF2018 at 691.521 kb on - strand, within GFF2018 at 691.568 kb on + strand, within GFF2018 at 691.577 kb on + strand, within GFF2018 at 691.577 kb on + strand, within GFF2018 at 691.577 kb on + strand, within GFF2018 at 691.577 kb on + strand, within GFF2018 at 691.578 kb on - strand, within GFF2018 at 691.578 kb on - strand, within GFF2018 at 691.578 kb on - strand, within GFF2018 at 691.578 kb on - strand, within GFF2018 at 691.578 kb on - strand, within GFF2018 at 691.873 kb on + strand at 691.928 kb on + strand at 691.929 kb on - strand at 691.994 kb on + strand at 691.994 kb on + strand at 691.994 kb on + strand at 691.994 kb on + strand at 691.995 kb on - strand at 691.995 kb on - strand at 691.995 kb on - strand at 691.995 kb on - strand at 691.995 kb on - strand at 691.995 kb on - strand at 692.123 kb on + strand, within GFF2019 at 692.127 kb on - strand, within GFF2019 at 692.135 kb on + strand, within GFF2019 at 692.135 kb on + strand, within GFF2019 at 692.135 kb on + strand, within GFF2019 at 692.267 kb on + strand, within GFF2019 at 692.267 kb on + strand, within GFF2019 at 692.268 kb on - strand, within GFF2019 at 692.268 kb on - strand, within GFF2019 at 692.268 kb on - strand, within GFF2019 at 692.287 kb on + strand, within GFF2019 at 692.391 kb on - strand, within GFF2019 at 692.391 kb on - strand, within GFF2019 at 692.391 kb on - strand, within GFF2019 at 692.398 kb on - strand, within GFF2019 at 692.450 kb on + strand, within GFF2019 at 692.451 kb on - strand, within GFF2019 at 692.451 kb on - strand, within GFF2019 at 692.451 kb on - strand, within GFF2019 at 692.451 kb on - strand, within GFF2019 at 692.492 kb on + strand, within GFF2019 at 692.493 kb on - strand, within GFF2019 at 692.493 kb on - strand, within GFF2019 at 692.603 kb on + strand, within GFF2019 at 692.604 kb on - strand, within GFF2019
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 689,734 - +0.1 689,907 + GFF2017 0.14 +0.5 689,925 + GFF2017 0.18 -0.2 689,926 - GFF2017 0.18 +0.2 690,238 - GFF2017 0.82 -0.4 690,239 + GFF2017 0.82 +0.3 690,239 + GFF2017 0.82 +0.2 690,240 - GFF2017 0.83 +0.2 690,240 - GFF2017 0.83 +0.7 690,240 - GFF2017 0.83 -0.5 690,240 - GFF2017 0.83 +0.5 690,240 - GFF2017 0.83 -0.0 690,377 + +0.7 690,378 - +0.2 690,917 + GFF2018 0.26 -0.8 690,917 + GFF2018 0.26 +1.1 690,918 - GFF2018 0.26 -0.2 690,918 - GFF2018 0.26 +1.6 690,918 - GFF2018 0.26 -1.6 691,097 + GFF2018 0.42 -2.0 691,097 + GFF2018 0.42 -1.0 691,098 - GFF2018 0.42 +0.4 691,188 - GFF2018 0.49 +2.7 691,188 - GFF2018 0.49 +1.3 691,188 - GFF2018 0.49 -0.2 691,188 - GFF2018 0.49 +0.6 691,227 - GFF2018 0.53 +0.5 691,227 - GFF2018 0.53 -0.2 691,235 + GFF2018 0.54 -0.3 691,250 + GFF2018 0.55 -0.2 691,251 - GFF2018 0.55 -1.0 691,251 - GFF2018 0.55 -0.5 691,251 - GFF2018 0.55 -1.4 691,520 + GFF2018 0.78 -1.1 691,520 + GFF2018 0.78 -0.1 691,521 - GFF2018 0.78 -2.2 691,521 - GFF2018 0.78 -0.5 691,521 - GFF2018 0.78 +0.1 691,521 - GFF2018 0.78 +0.7 691,568 + GFF2018 0.82 -0.1 691,577 + GFF2018 0.83 +1.2 691,577 + GFF2018 0.83 +1.0 691,577 + GFF2018 0.83 -0.4 691,577 + GFF2018 0.83 -1.0 691,578 - GFF2018 0.83 +0.6 691,578 - GFF2018 0.83 -0.8 691,578 - GFF2018 0.83 -0.5 691,578 - GFF2018 0.83 +1.1 691,578 - GFF2018 0.83 +1.9 691,873 + -0.6 691,928 + -0.9 691,929 - +1.1 691,994 + -0.0 691,994 + +0.4 691,994 + -0.1 691,994 + -1.0 691,995 - +0.4 691,995 - -0.1 691,995 - -0.7 691,995 - -0.2 691,995 - -0.6 691,995 - +1.3 692,123 + GFF2019 0.16 +0.7 692,127 - GFF2019 0.16 -0.5 692,135 + GFF2019 0.17 +1.5 692,135 + GFF2019 0.17 +0.4 692,135 + GFF2019 0.17 -1.2 692,267 + GFF2019 0.25 +0.2 692,267 + GFF2019 0.25 -0.3 692,268 - GFF2019 0.25 -1.1 692,268 - GFF2019 0.25 -0.4 692,268 - GFF2019 0.25 +0.0 692,287 + GFF2019 0.26 +0.7 692,391 - GFF2019 0.33 -1.3 692,391 - GFF2019 0.33 -0.3 692,391 - GFF2019 0.33 -1.6 692,398 - GFF2019 0.33 -0.1 692,450 + GFF2019 0.37 -0.2 692,451 - GFF2019 0.37 -1.2 692,451 - GFF2019 0.37 +0.7 692,451 - GFF2019 0.37 -2.1 692,451 - GFF2019 0.37 -0.2 692,492 + GFF2019 0.39 +0.2 692,493 - GFF2019 0.39 +1.0 692,493 - GFF2019 0.39 +0.8 692,603 + GFF2019 0.46 -0.2 692,604 - GFF2019 0.46 +1.1
Or see this region's nucleotide sequence