Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2016 and GFF2017 are separated by 41 nucleotides GFF2017 and GFF2018 are separated by 292 nucleotides
GFF2016 - HTH-type transcriptional regulator CdhR, at 688,862 to 689,797
GFF2016
GFF2017 - hypothetical protein, at 689,839 to 690,324
GFF2017
GFF2018 - Methylamine utilization protein MauG, at 690,617 to 691,771
GFF2018
Position (kb) 689
690
691 Strain fitness (log2 ratio) -2
-1
0
1
2 at 688.850 kb on + strand at 688.884 kb on - strand at 688.884 kb on - strand at 688.884 kb on - strand at 688.962 kb on + strand, within GFF2016 at 688.962 kb on + strand, within GFF2016 at 688.962 kb on + strand, within GFF2016 at 688.962 kb on + strand, within GFF2016 at 688.962 kb on + strand, within GFF2016 at 688.962 kb on + strand, within GFF2016 at 688.962 kb on + strand, within GFF2016 at 688.963 kb on - strand, within GFF2016 at 688.963 kb on - strand, within GFF2016 at 688.963 kb on - strand, within GFF2016 at 689.059 kb on + strand, within GFF2016 at 689.252 kb on + strand, within GFF2016 at 689.252 kb on + strand, within GFF2016 at 689.295 kb on + strand, within GFF2016 at 689.734 kb on - strand at 689.907 kb on + strand, within GFF2017 at 689.925 kb on + strand, within GFF2017 at 689.926 kb on - strand, within GFF2017 at 690.238 kb on - strand, within GFF2017 at 690.239 kb on + strand, within GFF2017 at 690.239 kb on + strand, within GFF2017 at 690.240 kb on - strand, within GFF2017 at 690.240 kb on - strand, within GFF2017 at 690.240 kb on - strand, within GFF2017 at 690.240 kb on - strand, within GFF2017 at 690.240 kb on - strand, within GFF2017 at 690.377 kb on + strand at 690.378 kb on - strand at 690.917 kb on + strand, within GFF2018 at 690.917 kb on + strand, within GFF2018 at 690.918 kb on - strand, within GFF2018 at 690.918 kb on - strand, within GFF2018 at 690.918 kb on - strand, within GFF2018 at 691.097 kb on + strand, within GFF2018 at 691.097 kb on + strand, within GFF2018 at 691.098 kb on - strand, within GFF2018 at 691.188 kb on - strand, within GFF2018 at 691.188 kb on - strand, within GFF2018 at 691.188 kb on - strand, within GFF2018 at 691.188 kb on - strand, within GFF2018 at 691.227 kb on - strand, within GFF2018 at 691.227 kb on - strand, within GFF2018 at 691.235 kb on + strand, within GFF2018 at 691.250 kb on + strand, within GFF2018 at 691.251 kb on - strand, within GFF2018 at 691.251 kb on - strand, within GFF2018 at 691.251 kb on - strand, within GFF2018
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 688,850 + +0.4 688,884 - +0.3 688,884 - -0.1 688,884 - -0.8 688,962 + GFF2016 0.11 -0.3 688,962 + GFF2016 0.11 +1.1 688,962 + GFF2016 0.11 -0.6 688,962 + GFF2016 0.11 -0.2 688,962 + GFF2016 0.11 -0.6 688,962 + GFF2016 0.11 -0.3 688,962 + GFF2016 0.11 -1.6 688,963 - GFF2016 0.11 -1.0 688,963 - GFF2016 0.11 -0.9 688,963 - GFF2016 0.11 +0.3 689,059 + GFF2016 0.21 -0.6 689,252 + GFF2016 0.42 +0.1 689,252 + GFF2016 0.42 -0.1 689,295 + GFF2016 0.46 -1.9 689,734 - +0.1 689,907 + GFF2017 0.14 +0.5 689,925 + GFF2017 0.18 -0.2 689,926 - GFF2017 0.18 +0.2 690,238 - GFF2017 0.82 -0.4 690,239 + GFF2017 0.82 +0.3 690,239 + GFF2017 0.82 +0.2 690,240 - GFF2017 0.83 +0.2 690,240 - GFF2017 0.83 +0.7 690,240 - GFF2017 0.83 -0.5 690,240 - GFF2017 0.83 +0.5 690,240 - GFF2017 0.83 -0.0 690,377 + +0.7 690,378 - +0.2 690,917 + GFF2018 0.26 -0.8 690,917 + GFF2018 0.26 +1.1 690,918 - GFF2018 0.26 -0.2 690,918 - GFF2018 0.26 +1.6 690,918 - GFF2018 0.26 -1.6 691,097 + GFF2018 0.42 -2.0 691,097 + GFF2018 0.42 -1.0 691,098 - GFF2018 0.42 +0.4 691,188 - GFF2018 0.49 +2.7 691,188 - GFF2018 0.49 +1.3 691,188 - GFF2018 0.49 -0.2 691,188 - GFF2018 0.49 +0.6 691,227 - GFF2018 0.53 +0.5 691,227 - GFF2018 0.53 -0.2 691,235 + GFF2018 0.54 -0.3 691,250 + GFF2018 0.55 -0.2 691,251 - GFF2018 0.55 -1.0 691,251 - GFF2018 0.55 -0.5 691,251 - GFF2018 0.55 -1.4
Or see this region's nucleotide sequence