Strain Fitness in Xanthobacter sp. DMC5 around GFF2013

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2012 and GFF2013 are separated by 399 nucleotidesGFF2013 and GFF2014 are separated by 227 nucleotidesGFF2014 and GFF2015 are separated by 18 nucleotides GFF2012 - Glutathione-regulated potassium-efflux system ancillary protein KefF, at 683,565 to 684,356 GFF2012 GFF2013 - Vitamin B12 transporter BtuB, at 684,756 to 687,314 GFF2013 GFF2014 - Nitrobenzene nitroreductase, at 687,542 to 688,249 GFF2014 GFF2015 - hypothetical protein, at 688,268 to 688,774 GFF2015 Position (kb) 684 685 686 687 688Strain fitness (log2 ratio) -2 -1 0 1 2 3at 683.784 kb on + strand, within GFF2012at 683.784 kb on + strand, within GFF2012at 683.784 kb on + strand, within GFF2012at 683.785 kb on - strand, within GFF2012at 683.877 kb on + strand, within GFF2012at 683.877 kb on + strand, within GFF2012at 683.919 kb on + strand, within GFF2012at 683.920 kb on - strand, within GFF2012at 683.937 kb on + strand, within GFF2012at 683.971 kb on - strand, within GFF2012at 684.039 kb on + strand, within GFF2012at 684.109 kb on - strand, within GFF2012at 684.145 kb on - strand, within GFF2012at 684.405 kb on - strandat 684.405 kb on - strandat 684.451 kb on + strandat 684.451 kb on + strandat 684.453 kb on + strandat 684.454 kb on - strandat 684.626 kb on - strandat 684.626 kb on - strandat 684.642 kb on - strandat 685.132 kb on - strand, within GFF2013at 685.132 kb on - strand, within GFF2013at 685.235 kb on + strand, within GFF2013at 685.246 kb on - strand, within GFF2013at 685.410 kb on + strand, within GFF2013at 685.410 kb on + strand, within GFF2013at 685.410 kb on + strand, within GFF2013at 685.411 kb on - strand, within GFF2013at 685.427 kb on + strand, within GFF2013at 685.474 kb on - strand, within GFF2013at 685.503 kb on + strand, within GFF2013at 685.504 kb on - strand, within GFF2013at 685.504 kb on - strand, within GFF2013at 685.505 kb on + strand, within GFF2013at 685.572 kb on + strand, within GFF2013at 685.573 kb on - strand, within GFF2013at 685.573 kb on - strand, within GFF2013at 685.573 kb on - strand, within GFF2013at 685.573 kb on - strand, within GFF2013at 685.573 kb on - strand, within GFF2013at 685.573 kb on - strand, within GFF2013at 685.698 kb on + strand, within GFF2013at 685.698 kb on + strand, within GFF2013at 685.698 kb on + strand, within GFF2013at 685.698 kb on + strand, within GFF2013at 685.699 kb on - strand, within GFF2013at 685.699 kb on - strand, within GFF2013at 685.699 kb on - strand, within GFF2013at 685.699 kb on - strand, within GFF2013at 685.756 kb on - strand, within GFF2013at 685.794 kb on + strand, within GFF2013at 685.795 kb on - strand, within GFF2013at 685.956 kb on + strand, within GFF2013at 685.956 kb on + strand, within GFF2013at 685.956 kb on + strand, within GFF2013at 685.986 kb on + strand, within GFF2013at 685.987 kb on - strand, within GFF2013at 686.041 kb on - strand, within GFF2013at 686.041 kb on - strand, within GFF2013at 686.134 kb on - strand, within GFF2013at 686.262 kb on + strand, within GFF2013at 686.292 kb on + strand, within GFF2013at 686.293 kb on - strand, within GFF2013at 686.338 kb on - strand, within GFF2013at 686.399 kb on + strand, within GFF2013at 686.400 kb on - strand, within GFF2013at 686.457 kb on + strand, within GFF2013at 686.458 kb on - strand, within GFF2013at 686.496 kb on + strand, within GFF2013at 686.497 kb on - strand, within GFF2013at 686.497 kb on - strand, within GFF2013at 686.497 kb on - strand, within GFF2013at 686.524 kb on - strand, within GFF2013at 686.655 kb on + strand, within GFF2013at 686.655 kb on + strand, within GFF2013at 686.655 kb on + strand, within GFF2013at 686.655 kb on + strand, within GFF2013at 686.722 kb on - strand, within GFF2013at 686.781 kb on + strand, within GFF2013at 686.784 kb on + strand, within GFF2013at 686.784 kb on + strand, within GFF2013at 686.784 kb on + strand, within GFF2013at 686.785 kb on - strand, within GFF2013at 686.785 kb on - strand, within GFF2013at 686.785 kb on - strand, within GFF2013at 686.785 kb on - strand, within GFF2013at 686.835 kb on + strand, within GFF2013at 686.835 kb on + strand, within GFF2013at 686.835 kb on + strand, within GFF2013at 686.835 kb on + strand, within GFF2013at 686.835 kb on + strand, within GFF2013at 686.836 kb on - strand, within GFF2013at 686.836 kb on - strand, within GFF2013at 686.859 kb on + strand, within GFF2013at 686.868 kb on + strand, within GFF2013at 686.869 kb on - strand, within GFF2013at 686.874 kb on + strand, within GFF2013at 686.875 kb on - strand, within GFF2013at 686.875 kb on - strand, within GFF2013at 686.875 kb on - strand, within GFF2013at 686.875 kb on - strand, within GFF2013at 686.879 kb on - strand, within GFF2013at 686.889 kb on + strand, within GFF2013at 686.904 kb on + strand, within GFF2013at 686.918 kb on + strand, within GFF2013at 686.919 kb on - strand, within GFF2013at 687.012 kb on + strand, within GFF2013at 687.013 kb on - strand, within GFF2013at 687.014 kb on + strand, within GFF2013at 687.014 kb on + strand, within GFF2013at 687.015 kb on - strand, within GFF2013at 687.015 kb on - strand, within GFF2013at 687.072 kb on + strandat 687.072 kb on + strandat 687.072 kb on + strandat 687.072 kb on + strandat 687.073 kb on - strandat 687.073 kb on - strandat 687.114 kb on + strandat 687.114 kb on + strandat 687.141 kb on + strandat 687.142 kb on - strandat 687.175 kb on - strandat 687.210 kb on + strandat 687.211 kb on - strandat 687.235 kb on - strandat 687.235 kb on - strandat 687.235 kb on - strandat 687.288 kb on + strandat 687.288 kb on + strandat 687.312 kb on + strandat 687.313 kb on - strandat 687.313 kb on - strandat 687.490 kb on + strandat 687.559 kb on + strandat 687.800 kb on + strand, within GFF2014at 687.801 kb on - strand, within GFF2014at 687.801 kb on - strand, within GFF2014at 687.801 kb on - strand, within GFF2014at 687.806 kb on + strand, within GFF2014at 687.806 kb on + strand, within GFF2014at 687.806 kb on + strand, within GFF2014at 687.806 kb on + strand, within GFF2014at 687.806 kb on + strand, within GFF2014at 687.806 kb on + strand, within GFF2014at 687.806 kb on + strand, within GFF2014at 687.806 kb on + strand, within GFF2014at 687.806 kb on + strand, within GFF2014at 687.807 kb on - strand, within GFF2014at 687.807 kb on - strand, within GFF2014at 687.807 kb on - strand, within GFF2014at 687.807 kb on - strand, within GFF2014at 687.807 kb on - strand, within GFF2014at 687.807 kb on - strand, within GFF2014at 687.809 kb on + strand, within GFF2014at 687.818 kb on - strand, within GFF2014at 687.834 kb on - strand, within GFF2014at 687.870 kb on - strand, within GFF2014at 687.907 kb on + strand, within GFF2014at 687.908 kb on - strand, within GFF2014at 687.908 kb on - strand, within GFF2014at 688.088 kb on + strand, within GFF2014at 688.089 kb on - strand, within GFF2014at 688.089 kb on - strand, within GFF2014at 688.089 kb on - strand, within GFF2014at 688.130 kb on + strand, within GFF2014

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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683,784 + GFF2012 0.28 -1.2
683,784 + GFF2012 0.28 -1.2
683,784 + GFF2012 0.28 +0.1
683,785 - GFF2012 0.28 -0.7
683,877 + GFF2012 0.39 +0.7
683,877 + GFF2012 0.39 -0.4
683,919 + GFF2012 0.45 +0.4
683,920 - GFF2012 0.45 -0.1
683,937 + GFF2012 0.47 -0.5
683,971 - GFF2012 0.51 +0.6
684,039 + GFF2012 0.60 -0.2
684,109 - GFF2012 0.69 +0.3
684,145 - GFF2012 0.73 -0.3
684,405 - -1.6
684,405 - -0.2
684,451 + -0.4
684,451 + +1.3
684,453 + +0.4
684,454 - +0.4
684,626 - +1.4
684,626 - -0.2
684,642 - -0.6
685,132 - GFF2013 0.15 +0.4
685,132 - GFF2013 0.15 -0.5
685,235 + GFF2013 0.19 -1.0
685,246 - GFF2013 0.19 -0.1
685,410 + GFF2013 0.26 -0.2
685,410 + GFF2013 0.26 -0.5
685,410 + GFF2013 0.26 -1.2
685,411 - GFF2013 0.26 -0.1
685,427 + GFF2013 0.26 +0.4
685,474 - GFF2013 0.28 +0.0
685,503 + GFF2013 0.29 -0.3
685,504 - GFF2013 0.29 -1.8
685,504 - GFF2013 0.29 -0.1
685,505 + GFF2013 0.29 +0.2
685,572 + GFF2013 0.32 +0.4
685,573 - GFF2013 0.32 +1.0
685,573 - GFF2013 0.32 +0.1
685,573 - GFF2013 0.32 +1.1
685,573 - GFF2013 0.32 -0.2
685,573 - GFF2013 0.32 -1.6
685,573 - GFF2013 0.32 -1.9
685,698 + GFF2013 0.37 +0.7
685,698 + GFF2013 0.37 +0.8
685,698 + GFF2013 0.37 +0.8
685,698 + GFF2013 0.37 +0.2
685,699 - GFF2013 0.37 +0.2
685,699 - GFF2013 0.37 +0.3
685,699 - GFF2013 0.37 -0.4
685,699 - GFF2013 0.37 +0.1
685,756 - GFF2013 0.39 -1.2
685,794 + GFF2013 0.41 +0.4
685,795 - GFF2013 0.41 -0.3
685,956 + GFF2013 0.47 +0.4
685,956 + GFF2013 0.47 +0.3
685,956 + GFF2013 0.47 -0.3
685,986 + GFF2013 0.48 +1.8
685,987 - GFF2013 0.48 +0.7
686,041 - GFF2013 0.50 -0.9
686,041 - GFF2013 0.50 -0.5
686,134 - GFF2013 0.54 +3.4
686,262 + GFF2013 0.59 -0.3
686,292 + GFF2013 0.60 +0.1
686,293 - GFF2013 0.60 -0.3
686,338 - GFF2013 0.62 -1.2
686,399 + GFF2013 0.64 -1.1
686,400 - GFF2013 0.64 +0.8
686,457 + GFF2013 0.66 -0.9
686,458 - GFF2013 0.67 +1.0
686,496 + GFF2013 0.68 -0.4
686,497 - GFF2013 0.68 -0.7
686,497 - GFF2013 0.68 -0.3
686,497 - GFF2013 0.68 +1.4
686,524 - GFF2013 0.69 -1.8
686,655 + GFF2013 0.74 -0.7
686,655 + GFF2013 0.74 +0.5
686,655 + GFF2013 0.74 -0.5
686,655 + GFF2013 0.74 -1.0
686,722 - GFF2013 0.77 +0.4
686,781 + GFF2013 0.79 +0.3
686,784 + GFF2013 0.79 +0.6
686,784 + GFF2013 0.79 +0.8
686,784 + GFF2013 0.79 -0.2
686,785 - GFF2013 0.79 -1.2
686,785 - GFF2013 0.79 -0.0
686,785 - GFF2013 0.79 +0.5
686,785 - GFF2013 0.79 -0.2
686,835 + GFF2013 0.81 +0.3
686,835 + GFF2013 0.81 +0.2
686,835 + GFF2013 0.81 -0.1
686,835 + GFF2013 0.81 -0.1
686,835 + GFF2013 0.81 -1.4
686,836 - GFF2013 0.81 -0.8
686,836 - GFF2013 0.81 -0.5
686,859 + GFF2013 0.82 +1.4
686,868 + GFF2013 0.83 +0.2
686,869 - GFF2013 0.83 -0.1
686,874 + GFF2013 0.83 +1.3
686,875 - GFF2013 0.83 -1.4
686,875 - GFF2013 0.83 +0.7
686,875 - GFF2013 0.83 -0.9
686,875 - GFF2013 0.83 -0.9
686,879 - GFF2013 0.83 -1.6
686,889 + GFF2013 0.83 +0.1
686,904 + GFF2013 0.84 -1.7
686,918 + GFF2013 0.84 -0.1
686,919 - GFF2013 0.85 +0.3
687,012 + GFF2013 0.88 -0.7
687,013 - GFF2013 0.88 +0.5
687,014 + GFF2013 0.88 +0.3
687,014 + GFF2013 0.88 -2.7
687,015 - GFF2013 0.88 +0.3
687,015 - GFF2013 0.88 +0.0
687,072 + -0.0
687,072 + +0.2
687,072 + -0.6
687,072 + +0.1
687,073 - +0.1
687,073 - -1.1
687,114 + -0.2
687,114 + -0.5
687,141 + +0.4
687,142 - +0.9
687,175 - +0.1
687,210 + -0.3
687,211 - +0.4
687,235 - -0.6
687,235 - +0.2
687,235 - +0.8
687,288 + +2.2
687,288 + +0.2
687,312 + -0.4
687,313 - +0.2
687,313 - +0.4
687,490 + -0.8
687,559 + -0.2
687,800 + GFF2014 0.36 -0.8
687,801 - GFF2014 0.37 +1.6
687,801 - GFF2014 0.37 +0.6
687,801 - GFF2014 0.37 +0.0
687,806 + GFF2014 0.37 +0.1
687,806 + GFF2014 0.37 -0.3
687,806 + GFF2014 0.37 +0.1
687,806 + GFF2014 0.37 +0.9
687,806 + GFF2014 0.37 +0.5
687,806 + GFF2014 0.37 -1.8
687,806 + GFF2014 0.37 -0.3
687,806 + GFF2014 0.37 +0.6
687,806 + GFF2014 0.37 -1.6
687,807 - GFF2014 0.37 -0.1
687,807 - GFF2014 0.37 -1.1
687,807 - GFF2014 0.37 +0.1
687,807 - GFF2014 0.37 +1.0
687,807 - GFF2014 0.37 -0.7
687,807 - GFF2014 0.37 -0.8
687,809 + GFF2014 0.38 -0.4
687,818 - GFF2014 0.39 -0.6
687,834 - GFF2014 0.41 +0.7
687,870 - GFF2014 0.46 -0.7
687,907 + GFF2014 0.52 -0.5
687,908 - GFF2014 0.52 +1.5
687,908 - GFF2014 0.52 -0.5
688,088 + GFF2014 0.77 -0.9
688,089 - GFF2014 0.77 -0.2
688,089 - GFF2014 0.77 +1.2
688,089 - GFF2014 0.77 +0.4
688,130 + GFF2014 0.83 +0.6

Or see this region's nucleotide sequence