Strain Fitness in Xanthobacter sp. DMC5 around GFF2008

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2007 and GFF2008 are separated by 90 nucleotidesGFF2008 and GFF2009 are separated by 48 nucleotides GFF2007 - Proline/betaine transporter, at 675,946 to 677,283 GFF2007 GFF2008 - Acetolactate synthase large subunit IlvB1, at 677,374 to 679,092 GFF2008 GFF2009 - Glutarate-semialdehyde dehydrogenase, at 679,141 to 680,604 GFF2009 Position (kb) 677 678 679 680Strain fitness (log2 ratio) -2 -1 0 1 2at 676.377 kb on + strand, within GFF2007at 676.377 kb on + strand, within GFF2007at 676.378 kb on - strand, within GFF2007at 676.495 kb on - strand, within GFF2007at 676.615 kb on + strand, within GFF2007at 676.616 kb on - strand, within GFF2007at 676.705 kb on + strand, within GFF2007at 676.759 kb on + strand, within GFF2007at 676.760 kb on - strand, within GFF2007at 676.760 kb on - strand, within GFF2007at 676.760 kb on - strand, within GFF2007at 676.762 kb on + strand, within GFF2007at 676.762 kb on + strand, within GFF2007at 676.762 kb on + strand, within GFF2007at 676.762 kb on + strand, within GFF2007at 676.762 kb on + strand, within GFF2007at 676.763 kb on - strand, within GFF2007at 676.763 kb on - strand, within GFF2007at 676.763 kb on - strand, within GFF2007at 676.763 kb on - strand, within GFF2007at 676.777 kb on + strand, within GFF2007at 676.778 kb on - strand, within GFF2007at 676.831 kb on + strand, within GFF2007at 676.832 kb on - strand, within GFF2007at 676.832 kb on - strand, within GFF2007at 676.832 kb on - strand, within GFF2007at 676.963 kb on + strand, within GFF2007at 676.963 kb on + strand, within GFF2007at 676.964 kb on - strand, within GFF2007at 677.008 kb on + strand, within GFF2007at 677.009 kb on - strand, within GFF2007at 677.044 kb on + strand, within GFF2007at 677.045 kb on - strand, within GFF2007at 677.234 kb on - strandat 677.245 kb on - strandat 677.282 kb on - strandat 677.516 kb on + strandat 677.517 kb on - strandat 677.570 kb on - strand, within GFF2008at 677.570 kb on - strand, within GFF2008at 677.740 kb on + strand, within GFF2008at 677.740 kb on + strand, within GFF2008at 677.740 kb on + strand, within GFF2008at 677.740 kb on + strand, within GFF2008at 677.741 kb on - strand, within GFF2008at 677.920 kb on + strand, within GFF2008at 677.920 kb on + strand, within GFF2008at 677.921 kb on - strand, within GFF2008at 678.130 kb on + strand, within GFF2008at 678.131 kb on - strand, within GFF2008at 678.131 kb on - strand, within GFF2008at 678.241 kb on + strand, within GFF2008at 678.241 kb on + strand, within GFF2008at 678.242 kb on - strand, within GFF2008at 678.242 kb on - strand, within GFF2008at 678.320 kb on - strand, within GFF2008at 678.320 kb on - strand, within GFF2008at 678.320 kb on - strand, within GFF2008at 678.455 kb on - strand, within GFF2008at 678.601 kb on + strand, within GFF2008at 678.766 kb on + strand, within GFF2008at 678.767 kb on - strand, within GFF2008at 678.808 kb on + strand, within GFF2008at 678.808 kb on + strand, within GFF2008at 678.808 kb on + strand, within GFF2008at 678.808 kb on + strand, within GFF2008at 678.808 kb on + strand, within GFF2008at 678.808 kb on + strand, within GFF2008at 678.809 kb on - strand, within GFF2008at 678.809 kb on - strand, within GFF2008at 678.809 kb on - strand, within GFF2008at 678.809 kb on - strand, within GFF2008at 678.809 kb on - strand, within GFF2008at 678.809 kb on - strand, within GFF2008at 678.809 kb on - strand, within GFF2008at 678.809 kb on - strand, within GFF2008at 678.809 kb on - strand, within GFF2008at 678.905 kb on - strand, within GFF2008at 678.905 kb on - strand, within GFF2008at 679.111 kb on - strandat 679.179 kb on - strandat 679.490 kb on - strand, within GFF2009at 679.490 kb on - strand, within GFF2009at 679.492 kb on + strand, within GFF2009at 679.492 kb on + strand, within GFF2009at 679.493 kb on - strand, within GFF2009at 679.493 kb on - strand, within GFF2009at 679.510 kb on + strand, within GFF2009at 679.510 kb on + strand, within GFF2009at 679.857 kb on + strand, within GFF2009at 679.858 kb on - strand, within GFF2009at 679.858 kb on - strand, within GFF2009at 680.042 kb on - strand, within GFF2009

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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676,377 + GFF2007 0.32 +0.1
676,377 + GFF2007 0.32 +0.6
676,378 - GFF2007 0.32 -0.1
676,495 - GFF2007 0.41 +0.4
676,615 + GFF2007 0.50 -0.2
676,616 - GFF2007 0.50 +0.8
676,705 + GFF2007 0.57 +0.8
676,759 + GFF2007 0.61 -0.8
676,760 - GFF2007 0.61 -0.7
676,760 - GFF2007 0.61 -0.5
676,760 - GFF2007 0.61 -1.0
676,762 + GFF2007 0.61 +0.1
676,762 + GFF2007 0.61 -2.1
676,762 + GFF2007 0.61 +0.5
676,762 + GFF2007 0.61 -0.2
676,762 + GFF2007 0.61 +0.8
676,763 - GFF2007 0.61 +0.1
676,763 - GFF2007 0.61 -0.8
676,763 - GFF2007 0.61 -0.7
676,763 - GFF2007 0.61 +0.7
676,777 + GFF2007 0.62 +1.0
676,778 - GFF2007 0.62 +0.2
676,831 + GFF2007 0.66 -0.2
676,832 - GFF2007 0.66 +2.2
676,832 - GFF2007 0.66 +2.0
676,832 - GFF2007 0.66 +0.4
676,963 + GFF2007 0.76 -0.6
676,963 + GFF2007 0.76 -0.3
676,964 - GFF2007 0.76 +1.6
677,008 + GFF2007 0.79 -0.9
677,009 - GFF2007 0.79 +0.7
677,044 + GFF2007 0.82 +0.8
677,045 - GFF2007 0.82 -0.6
677,234 - +0.2
677,245 - -1.6
677,282 - -0.3
677,516 + -0.9
677,517 - +0.2
677,570 - GFF2008 0.11 +0.6
677,570 - GFF2008 0.11 -0.1
677,740 + GFF2008 0.21 +0.6
677,740 + GFF2008 0.21 -1.1
677,740 + GFF2008 0.21 +0.1
677,740 + GFF2008 0.21 -0.2
677,741 - GFF2008 0.21 +1.4
677,920 + GFF2008 0.32 +0.4
677,920 + GFF2008 0.32 -2.4
677,921 - GFF2008 0.32 +1.1
678,130 + GFF2008 0.44 +1.4
678,131 - GFF2008 0.44 +0.0
678,131 - GFF2008 0.44 -1.8
678,241 + GFF2008 0.50 -0.2
678,241 + GFF2008 0.50 -0.2
678,242 - GFF2008 0.50 -0.7
678,242 - GFF2008 0.50 +0.5
678,320 - GFF2008 0.55 +0.3
678,320 - GFF2008 0.55 +0.9
678,320 - GFF2008 0.55 -0.5
678,455 - GFF2008 0.63 -0.6
678,601 + GFF2008 0.71 -0.9
678,766 + GFF2008 0.81 +0.1
678,767 - GFF2008 0.81 +1.1
678,808 + GFF2008 0.83 -2.7
678,808 + GFF2008 0.83 +0.1
678,808 + GFF2008 0.83 +0.4
678,808 + GFF2008 0.83 +0.8
678,808 + GFF2008 0.83 -1.1
678,808 + GFF2008 0.83 -1.7
678,809 - GFF2008 0.83 +0.1
678,809 - GFF2008 0.83 +0.7
678,809 - GFF2008 0.83 -0.1
678,809 - GFF2008 0.83 +1.7
678,809 - GFF2008 0.83 -0.6
678,809 - GFF2008 0.83 +0.3
678,809 - GFF2008 0.83 -0.0
678,809 - GFF2008 0.83 -1.2
678,809 - GFF2008 0.83 +0.6
678,905 - GFF2008 0.89 -1.0
678,905 - GFF2008 0.89 +0.2
679,111 - +0.3
679,179 - -0.2
679,490 - GFF2009 0.24 -0.2
679,490 - GFF2009 0.24 +1.0
679,492 + GFF2009 0.24 +0.4
679,492 + GFF2009 0.24 -0.2
679,493 - GFF2009 0.24 +0.3
679,493 - GFF2009 0.24 -0.5
679,510 + GFF2009 0.25 -0.3
679,510 + GFF2009 0.25 +0.8
679,857 + GFF2009 0.49 +0.1
679,858 - GFF2009 0.49 +0.2
679,858 - GFF2009 0.49 -0.1
680,042 - GFF2009 0.62 -0.1

Or see this region's nucleotide sequence