Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2005 and GFF2006 are separated by 42 nucleotides GFF2006 and GFF2007 are separated by 39 nucleotides GFF2007 and GFF2008 are separated by 90 nucleotides
GFF2005 - 4-chlorobenzoate--CoA ligase, at 673,513 to 675,057
GFF2005
GFF2006 - Carnitinyl-CoA dehydratase, at 675,100 to 675,906
GFF2006
GFF2007 - Proline/betaine transporter, at 675,946 to 677,283
GFF2007
GFF2008 - Acetolactate synthase large subunit IlvB1, at 677,374 to 679,092
GFF2008
Position (kb) 675
676
677
678 Strain fitness (log2 ratio) -2
-1
0
1
2 at 675.019 kb on + strand at 675.020 kb on - strand at 675.067 kb on - strand at 675.463 kb on + strand, within GFF2006 at 675.960 kb on + strand at 675.960 kb on + strand at 675.961 kb on - strand at 675.961 kb on - strand at 675.961 kb on - strand at 675.961 kb on - strand at 675.961 kb on - strand at 675.965 kb on - strand at 676.072 kb on + strand at 676.072 kb on + strand at 676.073 kb on - strand at 676.073 kb on - strand at 676.073 kb on - strand at 676.141 kb on + strand, within GFF2007 at 676.141 kb on + strand, within GFF2007 at 676.141 kb on + strand, within GFF2007 at 676.141 kb on + strand, within GFF2007 at 676.141 kb on + strand, within GFF2007 at 676.142 kb on - strand, within GFF2007 at 676.142 kb on - strand, within GFF2007 at 676.201 kb on + strand, within GFF2007 at 676.377 kb on + strand, within GFF2007 at 676.377 kb on + strand, within GFF2007 at 676.378 kb on - strand, within GFF2007 at 676.495 kb on - strand, within GFF2007 at 676.615 kb on + strand, within GFF2007 at 676.616 kb on - strand, within GFF2007 at 676.705 kb on + strand, within GFF2007 at 676.759 kb on + strand, within GFF2007 at 676.760 kb on - strand, within GFF2007 at 676.760 kb on - strand, within GFF2007 at 676.760 kb on - strand, within GFF2007 at 676.762 kb on + strand, within GFF2007 at 676.762 kb on + strand, within GFF2007 at 676.762 kb on + strand, within GFF2007 at 676.762 kb on + strand, within GFF2007 at 676.762 kb on + strand, within GFF2007 at 676.763 kb on - strand, within GFF2007 at 676.763 kb on - strand, within GFF2007 at 676.763 kb on - strand, within GFF2007 at 676.763 kb on - strand, within GFF2007 at 676.777 kb on + strand, within GFF2007 at 676.778 kb on - strand, within GFF2007 at 676.831 kb on + strand, within GFF2007 at 676.832 kb on - strand, within GFF2007 at 676.832 kb on - strand, within GFF2007 at 676.832 kb on - strand, within GFF2007 at 676.963 kb on + strand, within GFF2007 at 676.963 kb on + strand, within GFF2007 at 676.964 kb on - strand, within GFF2007 at 677.008 kb on + strand, within GFF2007 at 677.009 kb on - strand, within GFF2007 at 677.044 kb on + strand, within GFF2007 at 677.045 kb on - strand, within GFF2007 at 677.234 kb on - strand at 677.245 kb on - strand at 677.282 kb on - strand at 677.516 kb on + strand at 677.517 kb on - strand at 677.570 kb on - strand, within GFF2008 at 677.570 kb on - strand, within GFF2008 at 677.740 kb on + strand, within GFF2008 at 677.740 kb on + strand, within GFF2008 at 677.740 kb on + strand, within GFF2008 at 677.740 kb on + strand, within GFF2008 at 677.741 kb on - strand, within GFF2008 at 677.920 kb on + strand, within GFF2008 at 677.920 kb on + strand, within GFF2008 at 677.921 kb on - strand, within GFF2008 at 678.130 kb on + strand, within GFF2008 at 678.131 kb on - strand, within GFF2008 at 678.131 kb on - strand, within GFF2008 at 678.241 kb on + strand, within GFF2008 at 678.241 kb on + strand, within GFF2008 at 678.242 kb on - strand, within GFF2008 at 678.242 kb on - strand, within GFF2008
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 675,019 + -1.3 675,020 - -0.2 675,067 - -0.1 675,463 + GFF2006 0.45 +0.8 675,960 + +0.8 675,960 + -1.0 675,961 - +1.0 675,961 - -0.5 675,961 - -0.1 675,961 - -2.1 675,961 - -1.1 675,965 - +1.1 676,072 + -1.5 676,072 + +1.4 676,073 - -1.3 676,073 - +1.7 676,073 - +1.0 676,141 + GFF2007 0.15 +1.2 676,141 + GFF2007 0.15 -1.6 676,141 + GFF2007 0.15 +0.9 676,141 + GFF2007 0.15 +0.5 676,141 + GFF2007 0.15 +0.1 676,142 - GFF2007 0.15 +0.4 676,142 - GFF2007 0.15 +0.3 676,201 + GFF2007 0.19 +0.3 676,377 + GFF2007 0.32 +0.1 676,377 + GFF2007 0.32 +0.6 676,378 - GFF2007 0.32 -0.1 676,495 - GFF2007 0.41 +0.4 676,615 + GFF2007 0.50 -0.2 676,616 - GFF2007 0.50 +0.8 676,705 + GFF2007 0.57 +0.8 676,759 + GFF2007 0.61 -0.8 676,760 - GFF2007 0.61 -0.7 676,760 - GFF2007 0.61 -0.5 676,760 - GFF2007 0.61 -1.0 676,762 + GFF2007 0.61 +0.1 676,762 + GFF2007 0.61 -2.1 676,762 + GFF2007 0.61 +0.5 676,762 + GFF2007 0.61 -0.2 676,762 + GFF2007 0.61 +0.8 676,763 - GFF2007 0.61 +0.1 676,763 - GFF2007 0.61 -0.8 676,763 - GFF2007 0.61 -0.7 676,763 - GFF2007 0.61 +0.7 676,777 + GFF2007 0.62 +1.0 676,778 - GFF2007 0.62 +0.2 676,831 + GFF2007 0.66 -0.2 676,832 - GFF2007 0.66 +2.2 676,832 - GFF2007 0.66 +2.0 676,832 - GFF2007 0.66 +0.4 676,963 + GFF2007 0.76 -0.6 676,963 + GFF2007 0.76 -0.3 676,964 - GFF2007 0.76 +1.6 677,008 + GFF2007 0.79 -0.9 677,009 - GFF2007 0.79 +0.7 677,044 + GFF2007 0.82 +0.8 677,045 - GFF2007 0.82 -0.6 677,234 - +0.2 677,245 - -1.6 677,282 - -0.3 677,516 + -0.9 677,517 - +0.2 677,570 - GFF2008 0.11 +0.6 677,570 - GFF2008 0.11 -0.1 677,740 + GFF2008 0.21 +0.6 677,740 + GFF2008 0.21 -1.1 677,740 + GFF2008 0.21 +0.1 677,740 + GFF2008 0.21 -0.2 677,741 - GFF2008 0.21 +1.4 677,920 + GFF2008 0.32 +0.4 677,920 + GFF2008 0.32 -2.4 677,921 - GFF2008 0.32 +1.1 678,130 + GFF2008 0.44 +1.4 678,131 - GFF2008 0.44 +0.0 678,131 - GFF2008 0.44 -1.8 678,241 + GFF2008 0.50 -0.2 678,241 + GFF2008 0.50 -0.2 678,242 - GFF2008 0.50 -0.7 678,242 - GFF2008 0.50 +0.5
Or see this region's nucleotide sequence