Strain Fitness in Xanthobacter sp. DMC5 around GFF2006

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2005 and GFF2006 are separated by 42 nucleotidesGFF2006 and GFF2007 are separated by 39 nucleotides GFF2005 - 4-chlorobenzoate--CoA ligase, at 673,513 to 675,057 GFF2005 GFF2006 - Carnitinyl-CoA dehydratase, at 675,100 to 675,906 GFF2006 GFF2007 - Proline/betaine transporter, at 675,946 to 677,283 GFF2007 Position (kb) 675 676Strain fitness (log2 ratio) -2 -1 0 1 2at 674.254 kb on + strand, within GFF2005at 674.254 kb on + strand, within GFF2005at 674.255 kb on - strand, within GFF2005at 674.255 kb on - strand, within GFF2005at 674.435 kb on - strand, within GFF2005at 674.435 kb on - strand, within GFF2005at 674.435 kb on - strand, within GFF2005at 674.435 kb on - strand, within GFF2005at 674.540 kb on - strand, within GFF2005at 674.659 kb on + strand, within GFF2005at 674.659 kb on + strand, within GFF2005at 674.659 kb on + strand, within GFF2005at 674.660 kb on - strand, within GFF2005at 675.019 kb on + strandat 675.020 kb on - strandat 675.067 kb on - strandat 675.463 kb on + strand, within GFF2006at 675.960 kb on + strandat 675.960 kb on + strandat 675.961 kb on - strandat 675.961 kb on - strandat 675.961 kb on - strandat 675.961 kb on - strandat 675.961 kb on - strandat 675.965 kb on - strandat 676.072 kb on + strandat 676.072 kb on + strandat 676.073 kb on - strandat 676.073 kb on - strandat 676.073 kb on - strandat 676.141 kb on + strand, within GFF2007at 676.141 kb on + strand, within GFF2007at 676.141 kb on + strand, within GFF2007at 676.141 kb on + strand, within GFF2007at 676.141 kb on + strand, within GFF2007at 676.142 kb on - strand, within GFF2007at 676.142 kb on - strand, within GFF2007at 676.201 kb on + strand, within GFF2007at 676.377 kb on + strand, within GFF2007at 676.377 kb on + strand, within GFF2007at 676.378 kb on - strand, within GFF2007at 676.495 kb on - strand, within GFF2007at 676.615 kb on + strand, within GFF2007at 676.616 kb on - strand, within GFF2007at 676.705 kb on + strand, within GFF2007at 676.759 kb on + strand, within GFF2007at 676.760 kb on - strand, within GFF2007at 676.760 kb on - strand, within GFF2007at 676.760 kb on - strand, within GFF2007at 676.762 kb on + strand, within GFF2007at 676.762 kb on + strand, within GFF2007at 676.762 kb on + strand, within GFF2007at 676.762 kb on + strand, within GFF2007at 676.762 kb on + strand, within GFF2007at 676.763 kb on - strand, within GFF2007at 676.763 kb on - strand, within GFF2007at 676.763 kb on - strand, within GFF2007at 676.763 kb on - strand, within GFF2007at 676.777 kb on + strand, within GFF2007at 676.778 kb on - strand, within GFF2007at 676.831 kb on + strand, within GFF2007at 676.832 kb on - strand, within GFF2007at 676.832 kb on - strand, within GFF2007at 676.832 kb on - strand, within GFF2007

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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674,254 + GFF2005 0.48 -1.2
674,254 + GFF2005 0.48 -0.2
674,255 - GFF2005 0.48 -0.3
674,255 - GFF2005 0.48 +0.3
674,435 - GFF2005 0.60 +1.4
674,435 - GFF2005 0.60 +1.4
674,435 - GFF2005 0.60 +0.1
674,435 - GFF2005 0.60 +1.2
674,540 - GFF2005 0.66 -0.3
674,659 + GFF2005 0.74 -1.5
674,659 + GFF2005 0.74 -0.8
674,659 + GFF2005 0.74 +0.3
674,660 - GFF2005 0.74 -0.3
675,019 + -1.3
675,020 - -0.2
675,067 - -0.1
675,463 + GFF2006 0.45 +0.8
675,960 + +0.8
675,960 + -1.0
675,961 - +1.0
675,961 - -0.5
675,961 - -0.1
675,961 - -2.1
675,961 - -1.1
675,965 - +1.1
676,072 + -1.5
676,072 + +1.4
676,073 - -1.3
676,073 - +1.7
676,073 - +1.0
676,141 + GFF2007 0.15 +1.2
676,141 + GFF2007 0.15 -1.6
676,141 + GFF2007 0.15 +0.9
676,141 + GFF2007 0.15 +0.5
676,141 + GFF2007 0.15 +0.1
676,142 - GFF2007 0.15 +0.4
676,142 - GFF2007 0.15 +0.3
676,201 + GFF2007 0.19 +0.3
676,377 + GFF2007 0.32 +0.1
676,377 + GFF2007 0.32 +0.6
676,378 - GFF2007 0.32 -0.1
676,495 - GFF2007 0.41 +0.4
676,615 + GFF2007 0.50 -0.2
676,616 - GFF2007 0.50 +0.8
676,705 + GFF2007 0.57 +0.8
676,759 + GFF2007 0.61 -0.8
676,760 - GFF2007 0.61 -0.7
676,760 - GFF2007 0.61 -0.5
676,760 - GFF2007 0.61 -1.0
676,762 + GFF2007 0.61 +0.1
676,762 + GFF2007 0.61 -2.1
676,762 + GFF2007 0.61 +0.5
676,762 + GFF2007 0.61 -0.2
676,762 + GFF2007 0.61 +0.8
676,763 - GFF2007 0.61 +0.1
676,763 - GFF2007 0.61 -0.8
676,763 - GFF2007 0.61 -0.7
676,763 - GFF2007 0.61 +0.7
676,777 + GFF2007 0.62 +1.0
676,778 - GFF2007 0.62 +0.2
676,831 + GFF2007 0.66 -0.2
676,832 - GFF2007 0.66 +2.2
676,832 - GFF2007 0.66 +2.0
676,832 - GFF2007 0.66 +0.4

Or see this region's nucleotide sequence