Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1998 and GFF1999 are separated by 68 nucleotides GFF1999 and GFF2000 overlap by 1 nucleotides GFF2000 and GFF2001 are separated by 17 nucleotides
GFF1998 - hypothetical protein, at 665,422 to 666,462
GFF1998
GFF1999 - Vitamin B12 import ATP-binding protein BtuD, at 666,531 to 667,367
GFF1999
GFF2000 - Putative aliphatic sulfonates transport permease protein SsuC, at 667,367 to 668,137
GFF2000
GFF2001 - HTH-type transcriptional activator RhaS, at 668,155 to 668,994
GFF2001
Position (kb) 667
668
669 Strain fitness (log2 ratio) -2
-1
0
1 at 666.442 kb on + strand at 666.619 kb on - strand, within GFF1999 at 666.852 kb on + strand, within GFF1999 at 666.853 kb on - strand, within GFF1999 at 666.911 kb on + strand, within GFF1999 at 666.945 kb on + strand, within GFF1999 at 667.285 kb on - strand at 667.630 kb on + strand, within GFF2000 at 667.680 kb on - strand, within GFF2000 at 667.775 kb on + strand, within GFF2000 at 667.776 kb on - strand, within GFF2000 at 667.776 kb on - strand, within GFF2000 at 667.776 kb on - strand, within GFF2000 at 667.792 kb on + strand, within GFF2000 at 667.793 kb on - strand, within GFF2000 at 667.826 kb on + strand, within GFF2000 at 667.826 kb on + strand, within GFF2000 at 667.826 kb on + strand, within GFF2000 at 667.827 kb on - strand, within GFF2000 at 667.847 kb on + strand, within GFF2000 at 667.847 kb on + strand, within GFF2000 at 667.994 kb on + strand, within GFF2000 at 667.994 kb on + strand, within GFF2000 at 667.995 kb on - strand, within GFF2000 at 667.995 kb on - strand, within GFF2000 at 668.039 kb on + strand, within GFF2000 at 668.039 kb on + strand, within GFF2000 at 668.039 kb on + strand, within GFF2000 at 668.039 kb on + strand, within GFF2000 at 668.039 kb on + strand, within GFF2000 at 668.039 kb on + strand, within GFF2000 at 668.039 kb on + strand, within GFF2000 at 668.040 kb on - strand, within GFF2000 at 668.040 kb on - strand, within GFF2000 at 668.040 kb on - strand, within GFF2000 at 668.057 kb on - strand, within GFF2000 at 668.136 kb on - strand at 668.360 kb on + strand, within GFF2001 at 668.362 kb on + strand, within GFF2001 at 668.362 kb on + strand, within GFF2001 at 668.362 kb on + strand, within GFF2001 at 668.363 kb on - strand, within GFF2001 at 668.363 kb on - strand, within GFF2001 at 668.363 kb on - strand, within GFF2001 at 668.363 kb on - strand, within GFF2001 at 668.363 kb on - strand, within GFF2001 at 668.363 kb on - strand, within GFF2001 at 668.363 kb on - strand, within GFF2001 at 668.363 kb on - strand, within GFF2001 at 668.393 kb on + strand, within GFF2001 at 668.394 kb on - strand, within GFF2001 at 668.407 kb on + strand, within GFF2001 at 668.408 kb on - strand, within GFF2001 at 668.408 kb on - strand, within GFF2001 at 668.409 kb on + strand, within GFF2001 at 668.727 kb on + strand, within GFF2001 at 668.727 kb on + strand, within GFF2001 at 668.727 kb on + strand, within GFF2001 at 668.815 kb on + strand, within GFF2001 at 668.815 kb on + strand, within GFF2001 at 668.815 kb on + strand, within GFF2001 at 668.816 kb on - strand, within GFF2001 at 668.816 kb on - strand, within GFF2001 at 668.816 kb on - strand, within GFF2001 at 668.883 kb on + strand, within GFF2001 at 668.943 kb on + strand at 668.943 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 666,442 + -1.0 666,619 - GFF1999 0.11 -0.4 666,852 + GFF1999 0.38 +0.0 666,853 - GFF1999 0.38 +0.2 666,911 + GFF1999 0.45 +1.0 666,945 + GFF1999 0.49 +0.0 667,285 - +0.3 667,630 + GFF2000 0.34 -0.7 667,680 - GFF2000 0.41 +0.1 667,775 + GFF2000 0.53 -2.6 667,776 - GFF2000 0.53 +0.8 667,776 - GFF2000 0.53 +0.7 667,776 - GFF2000 0.53 +0.1 667,792 + GFF2000 0.55 +0.6 667,793 - GFF2000 0.55 -0.0 667,826 + GFF2000 0.60 -0.7 667,826 + GFF2000 0.60 -0.7 667,826 + GFF2000 0.60 +0.0 667,827 - GFF2000 0.60 -0.6 667,847 + GFF2000 0.62 -0.5 667,847 + GFF2000 0.62 +0.9 667,994 + GFF2000 0.81 -0.6 667,994 + GFF2000 0.81 +0.6 667,995 - GFF2000 0.81 +1.1 667,995 - GFF2000 0.81 -0.2 668,039 + GFF2000 0.87 -0.9 668,039 + GFF2000 0.87 +1.4 668,039 + GFF2000 0.87 +0.9 668,039 + GFF2000 0.87 -0.4 668,039 + GFF2000 0.87 +1.1 668,039 + GFF2000 0.87 +1.1 668,039 + GFF2000 0.87 +1.4 668,040 - GFF2000 0.87 -0.5 668,040 - GFF2000 0.87 +0.3 668,040 - GFF2000 0.87 +0.2 668,057 - GFF2000 0.89 -0.3 668,136 - +0.1 668,360 + GFF2001 0.24 +0.3 668,362 + GFF2001 0.25 +0.2 668,362 + GFF2001 0.25 +0.4 668,362 + GFF2001 0.25 -0.4 668,363 - GFF2001 0.25 -0.9 668,363 - GFF2001 0.25 +0.0 668,363 - GFF2001 0.25 +0.1 668,363 - GFF2001 0.25 -0.9 668,363 - GFF2001 0.25 +0.1 668,363 - GFF2001 0.25 +0.8 668,363 - GFF2001 0.25 +1.1 668,363 - GFF2001 0.25 -1.3 668,393 + GFF2001 0.28 +0.9 668,394 - GFF2001 0.28 -0.6 668,407 + GFF2001 0.30 +0.7 668,408 - GFF2001 0.30 -0.5 668,408 - GFF2001 0.30 +1.0 668,409 + GFF2001 0.30 +0.6 668,727 + GFF2001 0.68 -0.8 668,727 + GFF2001 0.68 -0.4 668,727 + GFF2001 0.68 +0.9 668,815 + GFF2001 0.79 +0.8 668,815 + GFF2001 0.79 +0.2 668,815 + GFF2001 0.79 -0.3 668,816 - GFF2001 0.79 -0.4 668,816 - GFF2001 0.79 +0.8 668,816 - GFF2001 0.79 +0.1 668,883 + GFF2001 0.87 -0.5 668,943 + -0.9 668,943 + +0.0
Or see this region's nucleotide sequence