Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1994 and GFF1995 are separated by 64 nucleotides GFF1995 and GFF1996 are separated by 287 nucleotides GFF1996 and GFF1997 are separated by 35 nucleotides
GFF1994 - (S)-mandelate dehydrogenase, at 660,605 to 661,900
GFF1994
GFF1995 - Hydrogen peroxide-inducible genes activator, at 661,965 to 662,954
GFF1995
GFF1996 - putative UbiX-like flavin prenyltransferase, at 663,242 to 663,862
GFF1996
GFF1997 - Phenolic acid decarboxylase, at 663,898 to 665,331
GFF1997
Position (kb) 661
662
663 Strain fitness (log2 ratio) -2
-1
0
1
2 at 661.134 kb on + strand, within GFF1994 at 661.134 kb on + strand, within GFF1994 at 661.135 kb on - strand, within GFF1994 at 661.258 kb on + strand, within GFF1994 at 661.259 kb on - strand, within GFF1994 at 661.383 kb on + strand, within GFF1994 at 661.384 kb on - strand, within GFF1994 at 661.461 kb on + strand, within GFF1994 at 661.461 kb on + strand, within GFF1994 at 661.462 kb on - strand, within GFF1994 at 661.962 kb on + strand at 662.933 kb on - strand at 663.005 kb on - strand at 663.030 kb on + strand at 663.044 kb on - strand at 663.057 kb on + strand at 663.057 kb on + strand at 663.296 kb on + strand at 663.296 kb on + strand at 663.297 kb on - strand at 663.297 kb on - strand at 663.297 kb on - strand at 663.297 kb on - strand at 663.297 kb on - strand at 663.485 kb on + strand, within GFF1996 at 663.705 kb on - strand, within GFF1996
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 661,134 + GFF1994 0.41 -0.7 661,134 + GFF1994 0.41 +1.1 661,135 - GFF1994 0.41 +0.8 661,258 + GFF1994 0.50 +0.3 661,259 - GFF1994 0.50 -0.7 661,383 + GFF1994 0.60 -0.2 661,384 - GFF1994 0.60 -2.3 661,461 + GFF1994 0.66 +0.8 661,461 + GFF1994 0.66 +1.4 661,462 - GFF1994 0.66 +1.9 661,962 + +0.1 662,933 - -0.8 663,005 - +1.4 663,030 + +0.4 663,044 - -0.2 663,057 + +0.5 663,057 + +0.3 663,296 + +1.6 663,296 + -0.8 663,297 - -0.3 663,297 - -0.2 663,297 - +0.4 663,297 - +0.8 663,297 - +0.9 663,485 + GFF1996 0.39 -1.0 663,705 - GFF1996 0.75 -0.1
Or see this region's nucleotide sequence