Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1989 and GFF1990 are separated by 12 nucleotides GFF1990 and GFF1991 overlap by 4 nucleotides GFF1991 and GFF1992 are separated by 4 nucleotides GFF1992 and GFF1993 are separated by 118 nucleotides
GFF1989 - Adaptive-response sensory-kinase SasA, at 653,789 to 656,563
GFF1989
GFF1990 - Sensor histidine kinase RcsC, at 656,576 to 657,019
GFF1990
GFF1991 - 3'-5' exonuclease DinG, at 657,016 to 659,190
GFF1991
GFF1992 - Pyrethroid hydrolase, at 659,195 to 659,929
GFF1992
GFF1993 - hypothetical protein, at 660,048 to 660,551
GFF1993
Position (kb) 657
658
659
660 Strain fitness (log2 ratio) -2
-1
0
1 at 656.930 kb on + strand, within GFF1990 at 656.930 kb on + strand, within GFF1990 at 656.930 kb on + strand, within GFF1990 at 656.930 kb on + strand, within GFF1990 at 656.930 kb on + strand, within GFF1990 at 656.931 kb on - strand, within GFF1990 at 657.244 kb on + strand, within GFF1991 at 657.244 kb on + strand, within GFF1991 at 657.244 kb on + strand, within GFF1991 at 657.244 kb on + strand, within GFF1991 at 657.244 kb on + strand, within GFF1991 at 657.245 kb on - strand, within GFF1991 at 657.245 kb on - strand, within GFF1991 at 657.843 kb on + strand, within GFF1991 at 657.844 kb on - strand, within GFF1991 at 657.844 kb on - strand, within GFF1991 at 657.853 kb on + strand, within GFF1991 at 657.854 kb on - strand, within GFF1991 at 657.952 kb on + strand, within GFF1991 at 657.953 kb on - strand, within GFF1991 at 657.953 kb on - strand, within GFF1991 at 657.953 kb on - strand, within GFF1991 at 658.541 kb on - strand, within GFF1991 at 658.541 kb on - strand, within GFF1991 at 658.616 kb on - strand, within GFF1991 at 658.617 kb on + strand, within GFF1991 at 658.618 kb on - strand, within GFF1991 at 658.622 kb on + strand, within GFF1991 at 659.167 kb on + strand at 659.167 kb on + strand at 659.167 kb on + strand at 659.168 kb on - strand at 659.168 kb on - strand at 659.168 kb on - strand at 659.185 kb on + strand at 659.325 kb on + strand, within GFF1992 at 659.326 kb on - strand, within GFF1992 at 659.326 kb on - strand, within GFF1992 at 659.326 kb on - strand, within GFF1992 at 659.349 kb on + strand, within GFF1992 at 659.349 kb on + strand, within GFF1992 at 659.349 kb on + strand, within GFF1992 at 659.350 kb on - strand, within GFF1992 at 659.404 kb on - strand, within GFF1992 at 659.607 kb on + strand, within GFF1992 at 659.607 kb on + strand, within GFF1992 at 659.608 kb on - strand, within GFF1992 at 660.015 kb on - strand at 660.027 kb on + strand at 660.094 kb on - strand at 660.094 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 656,930 + GFF1990 0.80 +0.2 656,930 + GFF1990 0.80 +0.1 656,930 + GFF1990 0.80 -0.2 656,930 + GFF1990 0.80 +0.1 656,930 + GFF1990 0.80 +0.8 656,931 - GFF1990 0.80 +0.2 657,244 + GFF1991 0.10 -0.2 657,244 + GFF1991 0.10 +0.0 657,244 + GFF1991 0.10 -0.1 657,244 + GFF1991 0.10 -0.6 657,244 + GFF1991 0.10 -2.6 657,245 - GFF1991 0.11 -0.2 657,245 - GFF1991 0.11 -0.2 657,843 + GFF1991 0.38 -0.9 657,844 - GFF1991 0.38 -0.4 657,844 - GFF1991 0.38 -0.2 657,853 + GFF1991 0.38 -0.9 657,854 - GFF1991 0.39 +0.6 657,952 + GFF1991 0.43 +0.4 657,953 - GFF1991 0.43 +0.9 657,953 - GFF1991 0.43 +0.4 657,953 - GFF1991 0.43 -0.1 658,541 - GFF1991 0.70 -1.2 658,541 - GFF1991 0.70 +0.2 658,616 - GFF1991 0.74 -0.7 658,617 + GFF1991 0.74 +0.3 658,618 - GFF1991 0.74 +0.4 658,622 + GFF1991 0.74 +0.1 659,167 + -0.5 659,167 + +0.8 659,167 + -1.4 659,168 - -0.1 659,168 - -1.2 659,168 - -0.2 659,185 + -0.8 659,325 + GFF1992 0.18 -0.4 659,326 - GFF1992 0.18 -0.6 659,326 - GFF1992 0.18 -0.2 659,326 - GFF1992 0.18 +0.5 659,349 + GFF1992 0.21 +0.1 659,349 + GFF1992 0.21 -1.1 659,349 + GFF1992 0.21 +0.3 659,350 - GFF1992 0.21 +0.8 659,404 - GFF1992 0.28 -1.7 659,607 + GFF1992 0.56 -0.3 659,607 + GFF1992 0.56 -0.2 659,608 - GFF1992 0.56 -0.1 660,015 - +1.3 660,027 + +0.8 660,094 - -0.4 660,094 - +1.4
Or see this region's nucleotide sequence