Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1984 and GFF1985 are separated by 469 nucleotides GFF1985 and GFF1986 overlap by 4 nucleotides
GFF1984 - Protein LacX, plasmid, at 648,463 to 649,347
GFF1984
GFF1985 - Inner membrane protein YjcH, at 649,817 to 650,125
GFF1985
GFF1986 - Cation/acetate symporter ActP, at 650,122 to 651,867
GFF1986
Position (kb) 649
650
651 Strain fitness (log2 ratio) -1
0
1
2 at 648.890 kb on + strand, within GFF1984 at 648.890 kb on + strand, within GFF1984 at 649.000 kb on + strand, within GFF1984 at 649.334 kb on - strand at 649.381 kb on + strand at 649.382 kb on - strand at 649.466 kb on + strand at 649.571 kb on + strand at 649.574 kb on + strand at 649.655 kb on + strand at 649.655 kb on + strand at 649.655 kb on + strand at 649.695 kb on + strand at 649.695 kb on + strand at 649.696 kb on - strand at 649.718 kb on - strand at 649.744 kb on + strand at 649.744 kb on + strand at 649.767 kb on + strand at 649.788 kb on + strand at 649.789 kb on - strand at 649.792 kb on + strand at 649.792 kb on + strand at 649.859 kb on + strand, within GFF1985 at 649.859 kb on + strand, within GFF1985 at 649.860 kb on - strand, within GFF1985 at 649.860 kb on - strand, within GFF1985 at 649.926 kb on - strand, within GFF1985 at 649.928 kb on + strand, within GFF1985 at 649.929 kb on - strand, within GFF1985 at 650.058 kb on - strand, within GFF1985 at 650.058 kb on - strand, within GFF1985 at 650.147 kb on - strand at 650.147 kb on - strand at 650.302 kb on + strand, within GFF1986 at 650.302 kb on + strand, within GFF1986 at 650.303 kb on - strand, within GFF1986 at 650.350 kb on + strand, within GFF1986 at 650.350 kb on + strand, within GFF1986 at 650.351 kb on - strand, within GFF1986 at 650.407 kb on + strand, within GFF1986 at 650.407 kb on + strand, within GFF1986 at 650.461 kb on + strand, within GFF1986 at 650.476 kb on + strand, within GFF1986 at 650.476 kb on + strand, within GFF1986 at 650.477 kb on - strand, within GFF1986 at 650.597 kb on + strand, within GFF1986 at 650.743 kb on + strand, within GFF1986 at 650.743 kb on + strand, within GFF1986 at 650.743 kb on + strand, within GFF1986 at 650.743 kb on + strand, within GFF1986 at 650.744 kb on - strand, within GFF1986 at 650.744 kb on - strand, within GFF1986 at 650.744 kb on - strand, within GFF1986
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 648,890 + GFF1984 0.48 +0.1 648,890 + GFF1984 0.48 -0.3 649,000 + GFF1984 0.61 -0.2 649,334 - +0.7 649,381 + -0.9 649,382 - -0.3 649,466 + -0.7 649,571 + +0.5 649,574 + -0.9 649,655 + -0.9 649,655 + -1.2 649,655 + -0.8 649,695 + -0.9 649,695 + -1.0 649,696 - -0.6 649,718 - +0.3 649,744 + -1.2 649,744 + -0.9 649,767 + +0.5 649,788 + -1.0 649,789 - -0.8 649,792 + -0.0 649,792 + -0.3 649,859 + GFF1985 0.14 +0.2 649,859 + GFF1985 0.14 +1.0 649,860 - GFF1985 0.14 +0.4 649,860 - GFF1985 0.14 -0.5 649,926 - GFF1985 0.35 +1.0 649,928 + GFF1985 0.36 +0.6 649,929 - GFF1985 0.36 -1.5 650,058 - GFF1985 0.78 -0.4 650,058 - GFF1985 0.78 +2.0 650,147 - -0.4 650,147 - +0.2 650,302 + GFF1986 0.10 -0.2 650,302 + GFF1986 0.10 +0.0 650,303 - GFF1986 0.10 -1.3 650,350 + GFF1986 0.13 +1.0 650,350 + GFF1986 0.13 +1.2 650,351 - GFF1986 0.13 +1.6 650,407 + GFF1986 0.16 +1.2 650,407 + GFF1986 0.16 +0.2 650,461 + GFF1986 0.19 +0.3 650,476 + GFF1986 0.20 +1.1 650,476 + GFF1986 0.20 -0.1 650,477 - GFF1986 0.20 -0.7 650,597 + GFF1986 0.27 +0.1 650,743 + GFF1986 0.36 -0.4 650,743 + GFF1986 0.36 +0.6 650,743 + GFF1986 0.36 -0.8 650,743 + GFF1986 0.36 -0.5 650,744 - GFF1986 0.36 +1.7 650,744 - GFF1986 0.36 -0.5 650,744 - GFF1986 0.36 +0.1
Or see this region's nucleotide sequence