Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1981 and GFF1982 are separated by 258 nucleotides GFF1982 and GFF1983 are separated by 120 nucleotides GFF1983 and GFF1984 are separated by 103 nucleotides
GFF1981 - Nitrate reductase, at 644,220 to 646,895
GFF1981
GFF1982 - Inorganic pyrophosphatase, at 647,154 to 647,696
GFF1982
GFF1983 - hypothetical protein, at 647,817 to 648,359
GFF1983
GFF1984 - Protein LacX, plasmid, at 648,463 to 649,347
GFF1984
Position (kb) 647
648 Strain fitness (log2 ratio) -2
-1
0
1
2 at 646.347 kb on + strand, within GFF1981 at 646.955 kb on + strand at 646.979 kb on - strand at 646.979 kb on - strand at 647.908 kb on + strand, within GFF1983 at 647.908 kb on + strand, within GFF1983 at 647.909 kb on - strand, within GFF1983 at 647.909 kb on - strand, within GFF1983 at 647.909 kb on - strand, within GFF1983 at 647.909 kb on - strand, within GFF1983 at 648.028 kb on + strand, within GFF1983 at 648.043 kb on + strand, within GFF1983 at 648.097 kb on + strand, within GFF1983 at 648.098 kb on - strand, within GFF1983 at 648.117 kb on - strand, within GFF1983 at 648.326 kb on + strand at 648.454 kb on + strand at 648.454 kb on + strand at 648.585 kb on - strand, within GFF1984 at 648.612 kb on - strand, within GFF1984 at 648.612 kb on - strand, within GFF1984 at 648.695 kb on + strand, within GFF1984
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 646,347 + GFF1981 0.79 -1.9 646,955 + +0.8 646,979 - -1.2 646,979 - +0.0 647,908 + GFF1983 0.17 +0.4 647,908 + GFF1983 0.17 +0.4 647,909 - GFF1983 0.17 -0.3 647,909 - GFF1983 0.17 -0.2 647,909 - GFF1983 0.17 +0.3 647,909 - GFF1983 0.17 +0.6 648,028 + GFF1983 0.39 +0.6 648,043 + GFF1983 0.42 +0.2 648,097 + GFF1983 0.52 -1.6 648,098 - GFF1983 0.52 +1.6 648,117 - GFF1983 0.55 +0.3 648,326 + -0.2 648,454 + +2.0 648,454 + -0.2 648,585 - GFF1984 0.14 -0.0 648,612 - GFF1984 0.17 +1.0 648,612 - GFF1984 0.17 -0.2 648,695 + GFF1984 0.26 +0.2
Or see this region's nucleotide sequence