Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1980 and GFF1981 are separated by 36 nucleotides GFF1981 and GFF1982 are separated by 258 nucleotides GFF1982 and GFF1983 are separated by 120 nucleotides
GFF1980 - Ion-translocating oxidoreductase complex subunit B, at 642,561 to 644,183
GFF1980
GFF1981 - Nitrate reductase, at 644,220 to 646,895
GFF1981
GFF1982 - Inorganic pyrophosphatase, at 647,154 to 647,696
GFF1982
GFF1983 - hypothetical protein, at 647,817 to 648,359
GFF1983
Position (kb) 644
645
646
647 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 643.375 kb on - strand, within GFF1980 at 643.545 kb on + strand, within GFF1980 at 643.545 kb on + strand, within GFF1980 at 643.612 kb on - strand, within GFF1980 at 643.695 kb on + strand, within GFF1980 at 643.695 kb on + strand, within GFF1980 at 643.695 kb on + strand, within GFF1980 at 643.696 kb on - strand, within GFF1980 at 643.696 kb on - strand, within GFF1980 at 643.696 kb on - strand, within GFF1980 at 643.696 kb on - strand, within GFF1980 at 643.697 kb on + strand, within GFF1980 at 643.698 kb on - strand, within GFF1980 at 643.867 kb on - strand, within GFF1980 at 643.876 kb on - strand, within GFF1980 at 643.962 kb on + strand, within GFF1980 at 643.962 kb on + strand, within GFF1980 at 643.962 kb on + strand, within GFF1980 at 643.962 kb on + strand, within GFF1980 at 643.963 kb on - strand, within GFF1980 at 643.963 kb on - strand, within GFF1980 at 643.963 kb on - strand, within GFF1980 at 644.032 kb on - strand at 644.163 kb on + strand at 644.178 kb on + strand at 644.179 kb on - strand at 644.179 kb on - strand at 644.187 kb on - strand at 644.187 kb on - strand at 644.268 kb on + strand at 644.501 kb on + strand, within GFF1981 at 644.502 kb on - strand, within GFF1981 at 644.502 kb on - strand, within GFF1981 at 644.544 kb on + strand, within GFF1981 at 644.545 kb on - strand, within GFF1981 at 644.545 kb on - strand, within GFF1981 at 644.545 kb on - strand, within GFF1981 at 644.574 kb on + strand, within GFF1981 at 644.574 kb on + strand, within GFF1981 at 644.575 kb on - strand, within GFF1981 at 644.575 kb on - strand, within GFF1981 at 644.575 kb on - strand, within GFF1981 at 644.575 kb on - strand, within GFF1981 at 644.577 kb on + strand, within GFF1981 at 644.578 kb on - strand, within GFF1981 at 644.706 kb on + strand, within GFF1981 at 644.706 kb on + strand, within GFF1981 at 644.706 kb on + strand, within GFF1981 at 644.814 kb on - strand, within GFF1981 at 644.814 kb on - strand, within GFF1981 at 644.958 kb on + strand, within GFF1981 at 644.958 kb on + strand, within GFF1981 at 644.959 kb on - strand, within GFF1981 at 644.959 kb on - strand, within GFF1981 at 645.328 kb on + strand, within GFF1981 at 645.596 kb on + strand, within GFF1981 at 645.597 kb on - strand, within GFF1981 at 645.597 kb on - strand, within GFF1981 at 645.837 kb on + strand, within GFF1981 at 645.837 kb on + strand, within GFF1981 at 645.838 kb on - strand, within GFF1981 at 646.008 kb on - strand, within GFF1981 at 646.347 kb on + strand, within GFF1981 at 646.955 kb on + strand at 646.979 kb on - strand at 646.979 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 643,375 - GFF1980 0.50 -1.6 643,545 + GFF1980 0.61 -2.2 643,545 + GFF1980 0.61 -0.6 643,612 - GFF1980 0.65 -2.5 643,695 + GFF1980 0.70 -3.3 643,695 + GFF1980 0.70 -2.0 643,695 + GFF1980 0.70 -2.5 643,696 - GFF1980 0.70 -0.9 643,696 - GFF1980 0.70 -2.7 643,696 - GFF1980 0.70 -2.4 643,696 - GFF1980 0.70 -1.7 643,697 + GFF1980 0.70 -1.6 643,698 - GFF1980 0.70 -2.9 643,867 - GFF1980 0.80 -2.0 643,876 - GFF1980 0.81 -1.3 643,962 + GFF1980 0.86 -3.0 643,962 + GFF1980 0.86 -3.0 643,962 + GFF1980 0.86 -1.4 643,962 + GFF1980 0.86 -1.2 643,963 - GFF1980 0.86 -1.6 643,963 - GFF1980 0.86 -2.5 643,963 - GFF1980 0.86 -1.2 644,032 - -0.6 644,163 + -3.9 644,178 + -1.5 644,179 - -1.4 644,179 - -0.8 644,187 - -0.8 644,187 - -0.1 644,268 + -3.0 644,501 + GFF1981 0.11 +0.1 644,502 - GFF1981 0.11 -3.2 644,502 - GFF1981 0.11 +0.1 644,544 + GFF1981 0.12 -1.5 644,545 - GFF1981 0.12 -1.3 644,545 - GFF1981 0.12 -3.3 644,545 - GFF1981 0.12 -1.9 644,574 + GFF1981 0.13 -2.8 644,574 + GFF1981 0.13 -2.7 644,575 - GFF1981 0.13 -3.0 644,575 - GFF1981 0.13 -3.8 644,575 - GFF1981 0.13 -2.8 644,575 - GFF1981 0.13 -3.1 644,577 + GFF1981 0.13 -2.5 644,578 - GFF1981 0.13 -0.2 644,706 + GFF1981 0.18 -2.9 644,706 + GFF1981 0.18 -1.9 644,706 + GFF1981 0.18 +0.4 644,814 - GFF1981 0.22 -2.5 644,814 - GFF1981 0.22 -3.1 644,958 + GFF1981 0.28 -2.3 644,958 + GFF1981 0.28 -2.0 644,959 - GFF1981 0.28 -1.7 644,959 - GFF1981 0.28 -2.1 645,328 + GFF1981 0.41 -1.7 645,596 + GFF1981 0.51 -0.7 645,597 - GFF1981 0.51 -2.8 645,597 - GFF1981 0.51 -1.8 645,837 + GFF1981 0.60 -2.9 645,837 + GFF1981 0.60 -2.2 645,838 - GFF1981 0.60 -1.5 646,008 - GFF1981 0.67 -1.9 646,347 + GFF1981 0.79 -1.9 646,955 + +0.8 646,979 - -1.2 646,979 - +0.0
Or see this region's nucleotide sequence