Strain Fitness in Xanthobacter sp. DMC5 around GFF1980

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1979 and GFF1980 are separated by 43 nucleotidesGFF1980 and GFF1981 are separated by 36 nucleotides GFF1979 - Sulfite reductase [ferredoxin], at 640,757 to 642,517 GFF1979 GFF1980 - Ion-translocating oxidoreductase complex subunit B, at 642,561 to 644,183 GFF1980 GFF1981 - Nitrate reductase, at 644,220 to 646,895 GFF1981 Position (kb) 642 643 644 645Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 641.711 kb on + strand, within GFF1979at 641.712 kb on - strand, within GFF1979at 641.712 kb on - strand, within GFF1979at 641.873 kb on + strand, within GFF1979at 641.873 kb on + strand, within GFF1979at 641.873 kb on + strand, within GFF1979at 641.873 kb on + strand, within GFF1979at 641.873 kb on + strand, within GFF1979at 641.874 kb on - strand, within GFF1979at 642.242 kb on + strand, within GFF1979at 642.243 kb on - strand, within GFF1979at 642.244 kb on + strand, within GFF1979at 642.244 kb on + strand, within GFF1979at 642.244 kb on + strand, within GFF1979at 642.245 kb on - strand, within GFF1979at 642.886 kb on - strand, within GFF1980at 642.900 kb on + strand, within GFF1980at 642.901 kb on - strand, within GFF1980at 642.901 kb on - strand, within GFF1980at 643.194 kb on + strand, within GFF1980at 643.195 kb on - strand, within GFF1980at 643.195 kb on - strand, within GFF1980at 643.375 kb on - strand, within GFF1980at 643.545 kb on + strand, within GFF1980at 643.545 kb on + strand, within GFF1980at 643.612 kb on - strand, within GFF1980at 643.695 kb on + strand, within GFF1980at 643.695 kb on + strand, within GFF1980at 643.695 kb on + strand, within GFF1980at 643.696 kb on - strand, within GFF1980at 643.696 kb on - strand, within GFF1980at 643.696 kb on - strand, within GFF1980at 643.696 kb on - strand, within GFF1980at 643.697 kb on + strand, within GFF1980at 643.698 kb on - strand, within GFF1980at 643.867 kb on - strand, within GFF1980at 643.876 kb on - strand, within GFF1980at 643.962 kb on + strand, within GFF1980at 643.962 kb on + strand, within GFF1980at 643.962 kb on + strand, within GFF1980at 643.962 kb on + strand, within GFF1980at 643.963 kb on - strand, within GFF1980at 643.963 kb on - strand, within GFF1980at 643.963 kb on - strand, within GFF1980at 644.032 kb on - strandat 644.163 kb on + strandat 644.178 kb on + strandat 644.179 kb on - strandat 644.179 kb on - strandat 644.187 kb on - strandat 644.187 kb on - strandat 644.268 kb on + strandat 644.501 kb on + strand, within GFF1981at 644.502 kb on - strand, within GFF1981at 644.502 kb on - strand, within GFF1981at 644.544 kb on + strand, within GFF1981at 644.545 kb on - strand, within GFF1981at 644.545 kb on - strand, within GFF1981at 644.545 kb on - strand, within GFF1981at 644.574 kb on + strand, within GFF1981at 644.574 kb on + strand, within GFF1981at 644.575 kb on - strand, within GFF1981at 644.575 kb on - strand, within GFF1981at 644.575 kb on - strand, within GFF1981at 644.575 kb on - strand, within GFF1981at 644.577 kb on + strand, within GFF1981at 644.578 kb on - strand, within GFF1981at 644.706 kb on + strand, within GFF1981at 644.706 kb on + strand, within GFF1981at 644.706 kb on + strand, within GFF1981at 644.814 kb on - strand, within GFF1981at 644.814 kb on - strand, within GFF1981at 644.958 kb on + strand, within GFF1981at 644.958 kb on + strand, within GFF1981at 644.959 kb on - strand, within GFF1981at 644.959 kb on - strand, within GFF1981

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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641,711 + GFF1979 0.54 -2.2
641,712 - GFF1979 0.54 -2.3
641,712 - GFF1979 0.54 -1.5
641,873 + GFF1979 0.63 -2.6
641,873 + GFF1979 0.63 -0.8
641,873 + GFF1979 0.63 -2.7
641,873 + GFF1979 0.63 -2.7
641,873 + GFF1979 0.63 -3.0
641,874 - GFF1979 0.63 -2.1
642,242 + GFF1979 0.84 -3.1
642,243 - GFF1979 0.84 -1.9
642,244 + GFF1979 0.84 -1.6
642,244 + GFF1979 0.84 -0.8
642,244 + GFF1979 0.84 -3.5
642,245 - GFF1979 0.84 -1.7
642,886 - GFF1980 0.20 -1.5
642,900 + GFF1980 0.21 -2.1
642,901 - GFF1980 0.21 -3.4
642,901 - GFF1980 0.21 -2.7
643,194 + GFF1980 0.39 -3.5
643,195 - GFF1980 0.39 -3.2
643,195 - GFF1980 0.39 -3.1
643,375 - GFF1980 0.50 -1.6
643,545 + GFF1980 0.61 -2.2
643,545 + GFF1980 0.61 -0.6
643,612 - GFF1980 0.65 -2.5
643,695 + GFF1980 0.70 -3.3
643,695 + GFF1980 0.70 -2.0
643,695 + GFF1980 0.70 -2.5
643,696 - GFF1980 0.70 -0.9
643,696 - GFF1980 0.70 -2.7
643,696 - GFF1980 0.70 -2.4
643,696 - GFF1980 0.70 -1.7
643,697 + GFF1980 0.70 -1.6
643,698 - GFF1980 0.70 -2.9
643,867 - GFF1980 0.80 -2.0
643,876 - GFF1980 0.81 -1.3
643,962 + GFF1980 0.86 -3.0
643,962 + GFF1980 0.86 -3.0
643,962 + GFF1980 0.86 -1.4
643,962 + GFF1980 0.86 -1.2
643,963 - GFF1980 0.86 -1.6
643,963 - GFF1980 0.86 -2.5
643,963 - GFF1980 0.86 -1.2
644,032 - -0.6
644,163 + -3.9
644,178 + -1.5
644,179 - -1.4
644,179 - -0.8
644,187 - -0.8
644,187 - -0.1
644,268 + -3.0
644,501 + GFF1981 0.11 +0.1
644,502 - GFF1981 0.11 -3.2
644,502 - GFF1981 0.11 +0.1
644,544 + GFF1981 0.12 -1.5
644,545 - GFF1981 0.12 -1.3
644,545 - GFF1981 0.12 -3.3
644,545 - GFF1981 0.12 -1.9
644,574 + GFF1981 0.13 -2.8
644,574 + GFF1981 0.13 -2.7
644,575 - GFF1981 0.13 -3.0
644,575 - GFF1981 0.13 -3.8
644,575 - GFF1981 0.13 -2.8
644,575 - GFF1981 0.13 -3.1
644,577 + GFF1981 0.13 -2.5
644,578 - GFF1981 0.13 -0.2
644,706 + GFF1981 0.18 -2.9
644,706 + GFF1981 0.18 -1.9
644,706 + GFF1981 0.18 +0.4
644,814 - GFF1981 0.22 -2.5
644,814 - GFF1981 0.22 -3.1
644,958 + GFF1981 0.28 -2.3
644,958 + GFF1981 0.28 -2.0
644,959 - GFF1981 0.28 -1.7
644,959 - GFF1981 0.28 -2.1

Or see this region's nucleotide sequence