Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1978 and GFF1979 are separated by 22 nucleotides GFF1979 and GFF1980 are separated by 43 nucleotides
GFF1978 - Nitrite reductase [NAD(P)H], at 639,520 to 640,734
GFF1978
GFF1979 - Sulfite reductase [ferredoxin], at 640,757 to 642,517
GFF1979
GFF1980 - Ion-translocating oxidoreductase complex subunit B, at 642,561 to 644,183
GFF1980
Position (kb) 640
641
642
643 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 640.375 kb on + strand, within GFF1978 at 640.375 kb on + strand, within GFF1978 at 640.375 kb on + strand, within GFF1978 at 640.376 kb on - strand, within GFF1978 at 640.376 kb on - strand, within GFF1978 at 640.376 kb on - strand, within GFF1978 at 640.396 kb on + strand, within GFF1978 at 640.396 kb on + strand, within GFF1978 at 640.397 kb on - strand, within GFF1978 at 640.448 kb on - strand, within GFF1978 at 640.646 kb on - strand at 640.657 kb on - strand at 640.790 kb on + strand at 640.791 kb on - strand at 640.791 kb on - strand at 640.988 kb on + strand, within GFF1979 at 641.058 kb on - strand, within GFF1979 at 641.058 kb on - strand, within GFF1979 at 641.058 kb on - strand, within GFF1979 at 641.058 kb on - strand, within GFF1979 at 641.058 kb on - strand, within GFF1979 at 641.072 kb on + strand, within GFF1979 at 641.072 kb on + strand, within GFF1979 at 641.072 kb on + strand, within GFF1979 at 641.073 kb on - strand, within GFF1979 at 641.073 kb on - strand, within GFF1979 at 641.396 kb on + strand, within GFF1979 at 641.396 kb on + strand, within GFF1979 at 641.396 kb on + strand, within GFF1979 at 641.396 kb on + strand, within GFF1979 at 641.397 kb on - strand, within GFF1979 at 641.397 kb on - strand, within GFF1979 at 641.420 kb on + strand, within GFF1979 at 641.420 kb on + strand, within GFF1979 at 641.420 kb on + strand, within GFF1979 at 641.420 kb on + strand, within GFF1979 at 641.420 kb on + strand, within GFF1979 at 641.421 kb on - strand, within GFF1979 at 641.711 kb on + strand, within GFF1979 at 641.712 kb on - strand, within GFF1979 at 641.712 kb on - strand, within GFF1979 at 641.873 kb on + strand, within GFF1979 at 641.873 kb on + strand, within GFF1979 at 641.873 kb on + strand, within GFF1979 at 641.873 kb on + strand, within GFF1979 at 641.873 kb on + strand, within GFF1979 at 641.874 kb on - strand, within GFF1979 at 642.242 kb on + strand, within GFF1979 at 642.243 kb on - strand, within GFF1979 at 642.244 kb on + strand, within GFF1979 at 642.244 kb on + strand, within GFF1979 at 642.244 kb on + strand, within GFF1979 at 642.245 kb on - strand, within GFF1979 at 642.886 kb on - strand, within GFF1980 at 642.900 kb on + strand, within GFF1980 at 642.901 kb on - strand, within GFF1980 at 642.901 kb on - strand, within GFF1980 at 643.194 kb on + strand, within GFF1980 at 643.195 kb on - strand, within GFF1980 at 643.195 kb on - strand, within GFF1980 at 643.375 kb on - strand, within GFF1980
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 640,375 + GFF1978 0.70 -2.3 640,375 + GFF1978 0.70 -1.4 640,375 + GFF1978 0.70 -2.3 640,376 - GFF1978 0.70 -2.3 640,376 - GFF1978 0.70 -2.6 640,376 - GFF1978 0.70 -3.9 640,396 + GFF1978 0.72 -1.8 640,396 + GFF1978 0.72 -2.6 640,397 - GFF1978 0.72 -1.7 640,448 - GFF1978 0.76 -2.6 640,646 - -1.8 640,657 - -1.1 640,790 + -2.6 640,791 - -2.5 640,791 - -3.3 640,988 + GFF1979 0.13 -2.8 641,058 - GFF1979 0.17 -2.4 641,058 - GFF1979 0.17 -4.5 641,058 - GFF1979 0.17 -1.6 641,058 - GFF1979 0.17 -1.4 641,058 - GFF1979 0.17 -2.9 641,072 + GFF1979 0.18 -0.2 641,072 + GFF1979 0.18 -1.4 641,072 + GFF1979 0.18 -0.4 641,073 - GFF1979 0.18 -3.3 641,073 - GFF1979 0.18 -3.3 641,396 + GFF1979 0.36 -1.1 641,396 + GFF1979 0.36 -2.3 641,396 + GFF1979 0.36 -2.3 641,396 + GFF1979 0.36 -1.8 641,397 - GFF1979 0.36 -1.5 641,397 - GFF1979 0.36 -2.1 641,420 + GFF1979 0.38 -2.6 641,420 + GFF1979 0.38 -0.2 641,420 + GFF1979 0.38 -1.6 641,420 + GFF1979 0.38 -2.2 641,420 + GFF1979 0.38 -2.5 641,421 - GFF1979 0.38 -1.3 641,711 + GFF1979 0.54 -2.2 641,712 - GFF1979 0.54 -2.3 641,712 - GFF1979 0.54 -1.5 641,873 + GFF1979 0.63 -2.6 641,873 + GFF1979 0.63 -0.8 641,873 + GFF1979 0.63 -2.7 641,873 + GFF1979 0.63 -2.7 641,873 + GFF1979 0.63 -3.0 641,874 - GFF1979 0.63 -2.1 642,242 + GFF1979 0.84 -3.1 642,243 - GFF1979 0.84 -1.9 642,244 + GFF1979 0.84 -1.6 642,244 + GFF1979 0.84 -0.8 642,244 + GFF1979 0.84 -3.5 642,245 - GFF1979 0.84 -1.7 642,886 - GFF1980 0.20 -1.5 642,900 + GFF1980 0.21 -2.1 642,901 - GFF1980 0.21 -3.4 642,901 - GFF1980 0.21 -2.7 643,194 + GFF1980 0.39 -3.5 643,195 - GFF1980 0.39 -3.2 643,195 - GFF1980 0.39 -3.1 643,375 - GFF1980 0.50 -1.6
Or see this region's nucleotide sequence