Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1974 and GFF1975 are separated by 70 nucleotides GFF1975 and GFF1976 are separated by 32 nucleotides GFF1976 and GFF1977 are separated by 102 nucleotides
GFF1974 - Nitrate/nitrite binding protein NrtA, at 635,820 to 637,184
GFF1974
GFF1975 - Bicarbonate transport system permease protein CmpB, at 637,255 to 638,148
GFF1975
GFF1976 - Nitrate import ATP-binding protein NrtC, at 638,181 to 638,975
GFF1976
GFF1977 - Bacterial hemoglobin, at 639,078 to 639,509
GFF1977
Position (kb) 637
638
639 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 636.267 kb on + strand, within GFF1974 at 636.267 kb on + strand, within GFF1974 at 636.267 kb on + strand, within GFF1974 at 636.267 kb on + strand, within GFF1974 at 636.268 kb on - strand, within GFF1974 at 636.268 kb on - strand, within GFF1974 at 636.321 kb on + strand, within GFF1974 at 636.401 kb on - strand, within GFF1974 at 636.821 kb on - strand, within GFF1974 at 636.822 kb on + strand, within GFF1974 at 636.823 kb on - strand, within GFF1974 at 636.885 kb on + strand, within GFF1974 at 636.886 kb on - strand, within GFF1974 at 636.915 kb on + strand, within GFF1974 at 637.146 kb on + strand at 637.146 kb on + strand at 637.147 kb on - strand at 637.407 kb on - strand, within GFF1975 at 637.771 kb on + strand, within GFF1975 at 637.915 kb on + strand, within GFF1975 at 637.915 kb on + strand, within GFF1975 at 637.915 kb on + strand, within GFF1975 at 637.916 kb on - strand, within GFF1975 at 637.916 kb on - strand, within GFF1975 at 638.066 kb on - strand at 638.066 kb on - strand at 638.066 kb on - strand at 638.286 kb on + strand, within GFF1976 at 638.286 kb on + strand, within GFF1976 at 638.286 kb on + strand, within GFF1976 at 638.286 kb on + strand, within GFF1976 at 638.286 kb on + strand, within GFF1976 at 638.286 kb on + strand, within GFF1976 at 638.286 kb on + strand, within GFF1976 at 638.286 kb on + strand, within GFF1976 at 638.287 kb on - strand, within GFF1976 at 638.287 kb on - strand, within GFF1976 at 638.287 kb on - strand, within GFF1976 at 638.287 kb on - strand, within GFF1976 at 638.287 kb on - strand, within GFF1976 at 638.292 kb on + strand, within GFF1976 at 638.463 kb on + strand, within GFF1976 at 638.463 kb on + strand, within GFF1976 at 638.835 kb on + strand, within GFF1976 at 638.835 kb on + strand, within GFF1976 at 638.835 kb on + strand, within GFF1976 at 638.836 kb on - strand, within GFF1976 at 638.907 kb on + strand at 638.907 kb on + strand at 638.907 kb on + strand at 638.907 kb on + strand at 638.908 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 636,267 + GFF1974 0.33 +0.5 636,267 + GFF1974 0.33 -1.5 636,267 + GFF1974 0.33 -1.1 636,267 + GFF1974 0.33 -2.5 636,268 - GFF1974 0.33 -3.2 636,268 - GFF1974 0.33 -0.2 636,321 + GFF1974 0.37 -0.2 636,401 - GFF1974 0.43 -1.2 636,821 - GFF1974 0.73 -1.6 636,822 + GFF1974 0.73 -3.1 636,823 - GFF1974 0.73 -2.8 636,885 + GFF1974 0.78 -2.3 636,886 - GFF1974 0.78 -3.5 636,915 + GFF1974 0.80 -3.5 637,146 + -1.8 637,146 + -2.6 637,147 - -1.1 637,407 - GFF1975 0.17 -3.3 637,771 + GFF1975 0.58 -1.1 637,915 + GFF1975 0.74 -1.0 637,915 + GFF1975 0.74 -1.3 637,915 + GFF1975 0.74 -2.2 637,916 - GFF1975 0.74 -1.6 637,916 - GFF1975 0.74 -2.0 638,066 - -2.5 638,066 - -2.7 638,066 - -2.0 638,286 + GFF1976 0.13 -2.8 638,286 + GFF1976 0.13 -1.7 638,286 + GFF1976 0.13 -1.8 638,286 + GFF1976 0.13 -1.2 638,286 + GFF1976 0.13 -2.4 638,286 + GFF1976 0.13 -2.8 638,286 + GFF1976 0.13 -0.1 638,286 + GFF1976 0.13 -2.2 638,287 - GFF1976 0.13 -2.1 638,287 - GFF1976 0.13 -2.5 638,287 - GFF1976 0.13 -2.4 638,287 - GFF1976 0.13 -3.0 638,287 - GFF1976 0.13 -1.4 638,292 + GFF1976 0.14 -1.7 638,463 + GFF1976 0.35 -3.5 638,463 + GFF1976 0.35 -1.7 638,835 + GFF1976 0.82 -0.6 638,835 + GFF1976 0.82 -0.4 638,835 + GFF1976 0.82 -2.1 638,836 - GFF1976 0.82 -3.8 638,907 + -2.3 638,907 + -3.0 638,907 + -1.5 638,907 + -2.3 638,908 - -1.1
Or see this region's nucleotide sequence