Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1971 and GFF1972 are separated by 247 nucleotides GFF1972 and GFF1973 are separated by 236 nucleotides GFF1973 and GFF1974 are separated by 480 nucleotides
GFF1971 - Siroheme synthase, at 630,018 to 631,526
GFF1971
GFF1972 - Putative aminoacrylate peracid reductase RutC, at 631,774 to 632,118
GFF1972
GFF1973 - DNA polymerase I, at 632,355 to 635,339
GFF1973
GFF1974 - Nitrate/nitrite binding protein NrtA, at 635,820 to 637,184
GFF1974
Position (kb) 632
633
634
635
636 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 631.563 kb on + strand at 631.563 kb on + strand at 631.564 kb on - strand at 631.564 kb on - strand at 631.667 kb on - strand at 632.051 kb on + strand, within GFF1972 at 632.051 kb on + strand, within GFF1972 at 632.052 kb on - strand, within GFF1972 at 632.151 kb on + strand at 632.152 kb on - strand at 632.152 kb on - strand at 632.343 kb on - strand at 632.343 kb on - strand at 635.621 kb on + strand at 635.621 kb on + strand at 635.658 kb on - strand at 635.658 kb on - strand at 635.693 kb on + strand at 635.694 kb on - strand at 636.033 kb on + strand, within GFF1974 at 636.033 kb on + strand, within GFF1974 at 636.033 kb on + strand, within GFF1974 at 636.034 kb on - strand, within GFF1974 at 636.034 kb on - strand, within GFF1974 at 636.068 kb on - strand, within GFF1974 at 636.216 kb on + strand, within GFF1974 at 636.217 kb on - strand, within GFF1974 at 636.217 kb on - strand, within GFF1974 at 636.217 kb on - strand, within GFF1974 at 636.267 kb on + strand, within GFF1974 at 636.267 kb on + strand, within GFF1974 at 636.267 kb on + strand, within GFF1974 at 636.267 kb on + strand, within GFF1974 at 636.268 kb on - strand, within GFF1974 at 636.268 kb on - strand, within GFF1974 at 636.321 kb on + strand, within GFF1974
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 631,563 + -3.1 631,563 + -0.2 631,564 - +0.5 631,564 - +0.5 631,667 - -1.9 632,051 + GFF1972 0.80 +1.0 632,051 + GFF1972 0.80 -0.1 632,052 - GFF1972 0.81 -0.0 632,151 + +0.4 632,152 - +0.3 632,152 - -0.2 632,343 - -0.6 632,343 - +0.5 635,621 + +0.2 635,621 + -0.0 635,658 - -1.9 635,658 - -1.2 635,693 + -0.6 635,694 - +0.6 636,033 + GFF1974 0.16 -2.8 636,033 + GFF1974 0.16 -2.3 636,033 + GFF1974 0.16 -0.5 636,034 - GFF1974 0.16 -0.2 636,034 - GFF1974 0.16 -1.7 636,068 - GFF1974 0.18 -2.7 636,216 + GFF1974 0.29 -1.8 636,217 - GFF1974 0.29 -1.2 636,217 - GFF1974 0.29 -3.5 636,217 - GFF1974 0.29 +0.4 636,267 + GFF1974 0.33 +0.5 636,267 + GFF1974 0.33 -1.5 636,267 + GFF1974 0.33 -1.1 636,267 + GFF1974 0.33 -2.5 636,268 - GFF1974 0.33 -3.2 636,268 - GFF1974 0.33 -0.2 636,321 + GFF1974 0.37 -0.2
Or see this region's nucleotide sequence