Strain Fitness in Xanthobacter sp. DMC5 around GFF1972

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1971 and GFF1972 are separated by 247 nucleotidesGFF1972 and GFF1973 are separated by 236 nucleotides GFF1971 - Siroheme synthase, at 630,018 to 631,526 GFF1971 GFF1972 - Putative aminoacrylate peracid reductase RutC, at 631,774 to 632,118 GFF1972 GFF1973 - DNA polymerase I, at 632,355 to 635,339 GFF1973 Position (kb) 631 632 633Strain fitness (log2 ratio) -3 -2 -1 0 1at 631.563 kb on + strandat 631.563 kb on + strandat 631.564 kb on - strandat 631.564 kb on - strandat 631.667 kb on - strandat 632.051 kb on + strand, within GFF1972at 632.051 kb on + strand, within GFF1972at 632.052 kb on - strand, within GFF1972at 632.151 kb on + strandat 632.152 kb on - strandat 632.152 kb on - strandat 632.343 kb on - strandat 632.343 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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631,563 + -3.1
631,563 + -0.2
631,564 - +0.5
631,564 - +0.5
631,667 - -1.9
632,051 + GFF1972 0.80 +1.0
632,051 + GFF1972 0.80 -0.1
632,052 - GFF1972 0.81 -0.0
632,151 + +0.4
632,152 - +0.3
632,152 - -0.2
632,343 - -0.6
632,343 - +0.5

Or see this region's nucleotide sequence