Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1970 and GFF1971 are separated by 75 nucleotides GFF1971 and GFF1972 are separated by 247 nucleotides GFF1972 and GFF1973 are separated by 236 nucleotides
GFF1970 - C4-dicarboxylate transport protein, at 628,587 to 629,942
GFF1970
GFF1971 - Siroheme synthase, at 630,018 to 631,526
GFF1971
GFF1972 - Putative aminoacrylate peracid reductase RutC, at 631,774 to 632,118
GFF1972
GFF1973 - DNA polymerase I, at 632,355 to 635,339
GFF1973
Position (kb) 630
631
632 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 629.083 kb on - strand, within GFF1970 at 629.097 kb on + strand, within GFF1970 at 629.244 kb on + strand, within GFF1970 at 629.244 kb on + strand, within GFF1970 at 629.244 kb on + strand, within GFF1970 at 629.244 kb on + strand, within GFF1970 at 629.377 kb on - strand, within GFF1970 at 629.377 kb on - strand, within GFF1970 at 629.535 kb on + strand, within GFF1970 at 629.535 kb on + strand, within GFF1970 at 629.535 kb on + strand, within GFF1970 at 629.536 kb on - strand, within GFF1970 at 629.536 kb on - strand, within GFF1970 at 629.998 kb on - strand at 630.019 kb on + strand at 631.563 kb on + strand at 631.563 kb on + strand at 631.564 kb on - strand at 631.564 kb on - strand at 631.667 kb on - strand at 632.051 kb on + strand, within GFF1972 at 632.051 kb on + strand, within GFF1972 at 632.052 kb on - strand, within GFF1972 at 632.151 kb on + strand at 632.152 kb on - strand at 632.152 kb on - strand at 632.343 kb on - strand at 632.343 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 629,083 - GFF1970 0.37 +0.3 629,097 + GFF1970 0.38 +0.4 629,244 + GFF1970 0.48 +0.2 629,244 + GFF1970 0.48 -0.8 629,244 + GFF1970 0.48 +1.8 629,244 + GFF1970 0.48 +0.5 629,377 - GFF1970 0.58 -0.5 629,377 - GFF1970 0.58 +0.8 629,535 + GFF1970 0.70 -0.2 629,535 + GFF1970 0.70 +0.9 629,535 + GFF1970 0.70 -0.7 629,536 - GFF1970 0.70 -0.2 629,536 - GFF1970 0.70 +0.2 629,998 - -0.3 630,019 + +0.6 631,563 + -3.1 631,563 + -0.2 631,564 - +0.5 631,564 - +0.5 631,667 - -1.9 632,051 + GFF1972 0.80 +1.0 632,051 + GFF1972 0.80 -0.1 632,052 - GFF1972 0.81 -0.0 632,151 + +0.4 632,152 - +0.3 632,152 - -0.2 632,343 - -0.6 632,343 - +0.5
Or see this region's nucleotide sequence