Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1963 and GFF1964 are separated by 145 nucleotides GFF1964 and GFF1965 are separated by 122 nucleotides
GFF1963 - Tol-Pal system protein TolB, at 620,214 to 622,913
GFF1963
GFF1964 - HTH-type transcriptional repressor CytR, at 623,059 to 624,162
GFF1964
GFF1965 - Hydroxyquinol 1,2-dioxygenase, at 624,285 to 625,253
GFF1965
Position (kb) 623
624
625 Strain fitness (log2 ratio) -1
0
1
2 at 622.065 kb on + strand, within GFF1963 at 622.066 kb on - strand, within GFF1963 at 622.112 kb on + strand, within GFF1963 at 622.112 kb on + strand, within GFF1963 at 622.112 kb on + strand, within GFF1963 at 622.137 kb on + strand, within GFF1963 at 622.138 kb on - strand, within GFF1963 at 622.242 kb on + strand, within GFF1963 at 622.242 kb on + strand, within GFF1963 at 622.242 kb on + strand, within GFF1963 at 622.243 kb on - strand, within GFF1963 at 622.368 kb on + strand, within GFF1963 at 622.368 kb on + strand, within GFF1963 at 622.368 kb on + strand, within GFF1963 at 622.368 kb on + strand, within GFF1963 at 622.368 kb on + strand, within GFF1963 at 622.368 kb on + strand, within GFF1963 at 622.368 kb on + strand, within GFF1963 at 622.368 kb on + strand, within GFF1963 at 622.369 kb on - strand, within GFF1963 at 622.369 kb on - strand, within GFF1963 at 622.369 kb on - strand, within GFF1963 at 622.369 kb on - strand, within GFF1963 at 622.369 kb on - strand, within GFF1963 at 622.640 kb on - strand, within GFF1963 at 623.012 kb on + strand at 623.198 kb on + strand, within GFF1964 at 624.807 kb on + strand, within GFF1965 at 624.926 kb on + strand, within GFF1965 at 625.041 kb on + strand, within GFF1965 at 625.042 kb on - strand, within GFF1965 at 625.042 kb on - strand, within GFF1965
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 622,065 + GFF1963 0.69 -0.3 622,066 - GFF1963 0.69 -0.7 622,112 + GFF1963 0.70 -0.7 622,112 + GFF1963 0.70 -0.5 622,112 + GFF1963 0.70 +1.4 622,137 + GFF1963 0.71 -0.9 622,138 - GFF1963 0.71 +0.7 622,242 + GFF1963 0.75 -0.2 622,242 + GFF1963 0.75 +1.6 622,242 + GFF1963 0.75 +0.9 622,243 - GFF1963 0.75 -0.9 622,368 + GFF1963 0.80 +1.2 622,368 + GFF1963 0.80 +1.2 622,368 + GFF1963 0.80 +0.4 622,368 + GFF1963 0.80 -0.1 622,368 + GFF1963 0.80 +0.1 622,368 + GFF1963 0.80 -1.3 622,368 + GFF1963 0.80 -1.2 622,368 + GFF1963 0.80 -0.2 622,369 - GFF1963 0.80 +2.0 622,369 - GFF1963 0.80 +0.0 622,369 - GFF1963 0.80 +0.4 622,369 - GFF1963 0.80 +1.1 622,369 - GFF1963 0.80 +0.8 622,640 - GFF1963 0.90 -0.2 623,012 + -0.3 623,198 + GFF1964 0.13 -0.4 624,807 + GFF1965 0.54 -0.5 624,926 + GFF1965 0.66 -0.1 625,041 + GFF1965 0.78 -1.1 625,042 - GFF1965 0.78 -0.4 625,042 - GFF1965 0.78 -0.9
Or see this region's nucleotide sequence