Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1949 and GFF1950 are separated by 154 nucleotides GFF1950 and GFF1951 are separated by 252 nucleotides GFF1951 and GFF1952 are separated by 194 nucleotides
GFF1949 - Rhomboid protease GlpG, at 604,749 to 605,552
GFF1949
GFF1950 - Inosine-5'-monophosphate dehydrogenase, at 605,707 to 606,138
GFF1950
GFF1951 - Peroxiredoxin, at 606,391 to 607,029
GFF1951
GFF1952 - hypothetical protein, at 607,224 to 608,330
GFF1952
Position (kb) 606
607
608 Strain fitness (log2 ratio) -1
0
1
2 at 605.692 kb on - strand at 605.692 kb on - strand at 606.076 kb on + strand, within GFF1950 at 606.076 kb on + strand, within GFF1950 at 606.077 kb on - strand, within GFF1950 at 606.077 kb on - strand, within GFF1950 at 606.121 kb on + strand at 606.122 kb on - strand at 606.122 kb on - strand at 606.122 kb on - strand at 606.284 kb on + strand at 606.611 kb on + strand, within GFF1951 at 606.612 kb on - strand, within GFF1951 at 606.612 kb on - strand, within GFF1951 at 606.704 kb on + strand, within GFF1951 at 607.208 kb on + strand at 607.393 kb on - strand, within GFF1952 at 607.461 kb on + strand, within GFF1952 at 607.461 kb on + strand, within GFF1952 at 607.462 kb on - strand, within GFF1952 at 607.603 kb on - strand, within GFF1952 at 607.782 kb on + strand, within GFF1952 at 607.782 kb on + strand, within GFF1952 at 607.783 kb on - strand, within GFF1952 at 607.783 kb on - strand, within GFF1952 at 607.783 kb on - strand, within GFF1952 at 607.845 kb on + strand, within GFF1952 at 607.846 kb on - strand, within GFF1952 at 607.846 kb on - strand, within GFF1952 at 607.875 kb on + strand, within GFF1952 at 607.875 kb on + strand, within GFF1952
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 605,692 - +0.7 605,692 - +0.1 606,076 + GFF1950 0.85 -0.1 606,076 + GFF1950 0.85 +0.1 606,077 - GFF1950 0.86 -0.2 606,077 - GFF1950 0.86 -0.5 606,121 + -0.2 606,122 - -0.5 606,122 - -0.6 606,122 - -0.8 606,284 + +1.7 606,611 + GFF1951 0.34 -1.0 606,612 - GFF1951 0.35 +0.5 606,612 - GFF1951 0.35 -1.0 606,704 + GFF1951 0.49 -1.1 607,208 + +0.6 607,393 - GFF1952 0.15 +0.2 607,461 + GFF1952 0.21 +1.8 607,461 + GFF1952 0.21 -0.3 607,462 - GFF1952 0.21 +0.1 607,603 - GFF1952 0.34 -1.1 607,782 + GFF1952 0.50 -1.0 607,782 + GFF1952 0.50 -0.3 607,783 - GFF1952 0.50 -0.7 607,783 - GFF1952 0.50 +0.5 607,783 - GFF1952 0.50 +0.3 607,845 + GFF1952 0.56 -0.6 607,846 - GFF1952 0.56 +0.2 607,846 - GFF1952 0.56 +0.4 607,875 + GFF1952 0.59 +1.1 607,875 + GFF1952 0.59 +0.3
Or see this region's nucleotide sequence