Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1942 and GFF1943 are separated by 277 nucleotides GFF1943 and GFF1944 overlap by 1 nucleotides GFF1944 and GFF1945 are separated by 707 nucleotides
GFF1942 - hypothetical protein, at 596,978 to 597,781
GFF1942
GFF1943 - hypothetical protein, at 598,059 to 598,289
GFF1943
GFF1944 - hypothetical protein, at 598,289 to 598,696
GFF1944
GFF1945 - ATP-dependent RecD-like DNA helicase, at 599,404 to 600,717
GFF1945
Position (kb) 598
599 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 597.326 kb on - strand, within GFF1942 at 597.629 kb on - strand, within GFF1942 at 597.629 kb on - strand, within GFF1942 at 597.666 kb on - strand, within GFF1942 at 597.726 kb on - strand at 597.726 kb on - strand at 597.857 kb on - strand at 597.869 kb on + strand at 597.966 kb on + strand at 597.966 kb on + strand at 598.026 kb on + strand at 598.304 kb on - strand at 598.330 kb on - strand, within GFF1944 at 598.416 kb on + strand, within GFF1944 at 598.416 kb on + strand, within GFF1944 at 598.416 kb on + strand, within GFF1944 at 598.417 kb on - strand, within GFF1944 at 598.417 kb on - strand, within GFF1944 at 598.547 kb on + strand, within GFF1944 at 598.642 kb on + strand, within GFF1944 at 598.644 kb on + strand, within GFF1944 at 598.644 kb on + strand, within GFF1944 at 598.645 kb on - strand, within GFF1944 at 598.645 kb on - strand, within GFF1944 at 598.645 kb on - strand, within GFF1944 at 598.654 kb on + strand, within GFF1944 at 598.655 kb on - strand, within GFF1944 at 598.750 kb on - strand at 598.834 kb on + strand at 598.838 kb on + strand at 598.838 kb on + strand at 598.839 kb on - strand at 598.843 kb on - strand at 598.872 kb on + strand at 598.874 kb on + strand at 598.875 kb on - strand at 598.875 kb on - strand at 598.884 kb on + strand at 598.924 kb on + strand at 598.925 kb on - strand at 598.931 kb on - strand at 598.961 kb on + strand at 598.969 kb on + strand at 598.970 kb on - strand at 598.970 kb on - strand at 598.999 kb on + strand at 599.000 kb on - strand at 599.000 kb on - strand at 599.255 kb on - strand at 599.268 kb on + strand at 599.269 kb on - strand at 599.277 kb on + strand at 599.278 kb on - strand at 599.395 kb on + strand at 599.395 kb on + strand at 599.395 kb on + strand at 599.396 kb on - strand at 599.522 kb on + strand at 599.522 kb on + strand at 599.522 kb on + strand at 599.522 kb on + strand at 599.522 kb on + strand at 599.523 kb on - strand at 599.523 kb on - strand at 599.523 kb on - strand at 599.523 kb on - strand at 599.523 kb on - strand at 599.523 kb on - strand at 599.639 kb on + strand, within GFF1945 at 599.639 kb on + strand, within GFF1945 at 599.639 kb on + strand, within GFF1945 at 599.639 kb on + strand, within GFF1945 at 599.639 kb on + strand, within GFF1945 at 599.639 kb on + strand, within GFF1945 at 599.640 kb on - strand, within GFF1945 at 599.640 kb on - strand, within GFF1945
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 597,326 - GFF1942 0.43 +0.0 597,629 - GFF1942 0.81 -0.9 597,629 - GFF1942 0.81 -0.7 597,666 - GFF1942 0.86 -0.8 597,726 - +0.1 597,726 - +0.1 597,857 - +2.7 597,869 + -2.0 597,966 + +0.4 597,966 + -0.2 598,026 + +0.1 598,304 - +0.2 598,330 - GFF1944 0.10 +0.5 598,416 + GFF1944 0.31 +0.7 598,416 + GFF1944 0.31 +1.0 598,416 + GFF1944 0.31 -0.4 598,417 - GFF1944 0.31 -0.2 598,417 - GFF1944 0.31 -1.5 598,547 + GFF1944 0.63 +0.7 598,642 + GFF1944 0.87 -0.8 598,644 + GFF1944 0.87 +0.7 598,644 + GFF1944 0.87 +1.4 598,645 - GFF1944 0.87 +1.3 598,645 - GFF1944 0.87 +0.6 598,645 - GFF1944 0.87 +1.0 598,654 + GFF1944 0.89 +0.4 598,655 - GFF1944 0.90 +0.3 598,750 - +1.0 598,834 + +0.8 598,838 + -0.5 598,838 + +0.9 598,839 - +0.5 598,843 - +1.6 598,872 + -2.0 598,874 + -1.2 598,875 - +0.0 598,875 - +0.7 598,884 + +0.1 598,924 + +1.0 598,925 - +0.3 598,931 - +0.7 598,961 + +0.3 598,969 + -0.7 598,970 - -0.2 598,970 - -1.6 598,999 + +0.7 599,000 - +0.8 599,000 - -0.3 599,255 - -0.2 599,268 + +0.1 599,269 - +0.5 599,277 + -0.1 599,278 - +2.4 599,395 + +1.4 599,395 + +0.6 599,395 + +0.1 599,396 - -0.8 599,522 + +0.2 599,522 + -0.1 599,522 + +1.1 599,522 + -0.4 599,522 + +0.3 599,523 - -1.0 599,523 - -1.8 599,523 - -0.3 599,523 - +0.4 599,523 - +0.3 599,523 - +0.6 599,639 + GFF1945 0.18 +0.0 599,639 + GFF1945 0.18 +0.1 599,639 + GFF1945 0.18 -0.1 599,639 + GFF1945 0.18 -1.2 599,639 + GFF1945 0.18 -1.5 599,639 + GFF1945 0.18 -0.7 599,640 - GFF1945 0.18 -2.8 599,640 - GFF1945 0.18 -0.7
Or see this region's nucleotide sequence