Strain Fitness in Xanthobacter sp. DMC5 around GFF1939

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1937 and GFF1938 are separated by 119 nucleotidesGFF1938 and GFF1939 overlap by 4 nucleotidesGFF1939 and GFF1940 are separated by 67 nucleotidesGFF1940 and GFF1941 are separated by 3 nucleotides GFF1937 - hypothetical protein, at 592,682 to 593,308 GFF1937 GFF1938 - Transcriptional regulatory protein OmpR, at 593,428 to 594,135 GFF1938 GFF1939 - Adaptive-response sensory-kinase SasA, at 594,132 to 595,526 GFF1939 GFF1940 - Multifunctional CCA protein, at 595,594 to 596,460 GFF1940 GFF1941 - putative chaperone CsaA, at 596,464 to 596,823 GFF1941 Position (kb) 594 595 596Strain fitness (log2 ratio) -1 0 1at 596.063 kb on + strand, within GFF1940at 596.285 kb on - strand, within GFF1940

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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596,063 + GFF1940 0.54 -0.4
596,285 - GFF1940 0.80 -0.5

Or see this region's nucleotide sequence