Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1934 and GFF1935 are separated by 9 nucleotides GFF1935 and GFF1936 are separated by 104 nucleotides GFF1936 and GFF1937 are separated by 142 nucleotides GFF1937 and GFF1938 are separated by 119 nucleotides
GFF1934 - Ribose-phosphate pyrophosphokinase, at 589,787 to 590,740
GFF1934
GFF1935 - hypothetical protein, at 590,750 to 591,541
GFF1935
GFF1936 - Branched-chain-amino-acid aminotransferase, at 591,646 to 592,539
GFF1936
GFF1937 - hypothetical protein, at 592,682 to 593,308
GFF1937
GFF1938 - Transcriptional regulatory protein OmpR, at 593,428 to 594,135
GFF1938
Position (kb) 591
592
593 Strain fitness (log2 ratio) -1
0
1 at 590.745 kb on + strand at 590.746 kb on - strand at 590.901 kb on + strand, within GFF1935 at 590.901 kb on + strand, within GFF1935 at 590.902 kb on - strand, within GFF1935 at 591.013 kb on - strand, within GFF1935 at 591.013 kb on - strand, within GFF1935 at 591.013 kb on - strand, within GFF1935 at 591.013 kb on - strand, within GFF1935 at 591.060 kb on + strand, within GFF1935 at 591.533 kb on - strand at 591.589 kb on + strand at 591.623 kb on + strand at 591.624 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 590,745 + +0.7 590,746 - -0.2 590,901 + GFF1935 0.19 -1.7 590,901 + GFF1935 0.19 -0.6 590,902 - GFF1935 0.19 +0.1 591,013 - GFF1935 0.33 -1.1 591,013 - GFF1935 0.33 -0.0 591,013 - GFF1935 0.33 +0.3 591,013 - GFF1935 0.33 +0.7 591,060 + GFF1935 0.39 -0.2 591,533 - +0.1 591,589 + +0.0 591,623 + +0.1 591,624 - +0.6
Or see this region's nucleotide sequence