Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1933 and GFF1934 are separated by 164 nucleotides GFF1934 and GFF1935 are separated by 9 nucleotides GFF1935 and GFF1936 are separated by 104 nucleotides
GFF1933 - hypothetical protein, at 588,933 to 589,622
GFF1933
GFF1934 - Ribose-phosphate pyrophosphokinase, at 589,787 to 590,740
GFF1934
GFF1935 - hypothetical protein, at 590,750 to 591,541
GFF1935
GFF1936 - Branched-chain-amino-acid aminotransferase, at 591,646 to 592,539
GFF1936
Position (kb) 589
590
591 Strain fitness (log2 ratio) -1
0
1 at 588.789 kb on + strand at 588.790 kb on - strand at 588.790 kb on - strand at 589.243 kb on - strand, within GFF1933 at 589.285 kb on - strand, within GFF1933 at 589.299 kb on + strand, within GFF1933 at 589.300 kb on - strand, within GFF1933 at 589.300 kb on - strand, within GFF1933 at 589.608 kb on + strand at 589.699 kb on + strand at 589.721 kb on + strand at 590.745 kb on + strand at 590.746 kb on - strand at 590.901 kb on + strand, within GFF1935 at 590.901 kb on + strand, within GFF1935 at 590.902 kb on - strand, within GFF1935 at 591.013 kb on - strand, within GFF1935 at 591.013 kb on - strand, within GFF1935 at 591.013 kb on - strand, within GFF1935 at 591.013 kb on - strand, within GFF1935 at 591.060 kb on + strand, within GFF1935 at 591.533 kb on - strand at 591.589 kb on + strand at 591.623 kb on + strand at 591.624 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 588,789 + +0.5 588,790 - -0.1 588,790 - +0.1 589,243 - GFF1933 0.45 +1.1 589,285 - GFF1933 0.51 -0.2 589,299 + GFF1933 0.53 -1.4 589,300 - GFF1933 0.53 +1.0 589,300 - GFF1933 0.53 -0.2 589,608 + +0.7 589,699 + +0.1 589,721 + -0.6 590,745 + +0.7 590,746 - -0.2 590,901 + GFF1935 0.19 -1.7 590,901 + GFF1935 0.19 -0.6 590,902 - GFF1935 0.19 +0.1 591,013 - GFF1935 0.33 -1.1 591,013 - GFF1935 0.33 -0.0 591,013 - GFF1935 0.33 +0.3 591,013 - GFF1935 0.33 +0.7 591,060 + GFF1935 0.39 -0.2 591,533 - +0.1 591,589 + +0.0 591,623 + +0.1 591,624 - +0.6
Or see this region's nucleotide sequence