Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1931 and GFF1932 are separated by 16 nucleotides GFF1932 and GFF1933 are separated by 158 nucleotides GFF1933 and GFF1934 are separated by 164 nucleotides
GFF1931 - Polyphenol oxidase, at 587,439 to 588,206
GFF1931
GFF1932 - hypothetical protein, at 588,223 to 588,774
GFF1932
GFF1933 - hypothetical protein, at 588,933 to 589,622
GFF1933
GFF1934 - Ribose-phosphate pyrophosphokinase, at 589,787 to 590,740
GFF1934
Position (kb) 588
589
590 Strain fitness (log2 ratio) -2
-1
0
1 at 587.938 kb on - strand, within GFF1931 at 588.111 kb on + strand, within GFF1931 at 588.111 kb on + strand, within GFF1931 at 588.111 kb on + strand, within GFF1931 at 588.111 kb on + strand, within GFF1931 at 588.112 kb on - strand, within GFF1931 at 588.112 kb on - strand, within GFF1931 at 588.112 kb on - strand, within GFF1931 at 588.112 kb on - strand, within GFF1931 at 588.114 kb on - strand, within GFF1931 at 588.452 kb on + strand, within GFF1932 at 588.452 kb on + strand, within GFF1932 at 588.452 kb on + strand, within GFF1932 at 588.452 kb on + strand, within GFF1932 at 588.453 kb on - strand, within GFF1932 at 588.453 kb on - strand, within GFF1932 at 588.619 kb on + strand, within GFF1932 at 588.619 kb on + strand, within GFF1932 at 588.620 kb on - strand, within GFF1932 at 588.620 kb on - strand, within GFF1932 at 588.696 kb on + strand, within GFF1932 at 588.696 kb on + strand, within GFF1932 at 588.697 kb on - strand, within GFF1932 at 588.697 kb on - strand, within GFF1932 at 588.716 kb on - strand, within GFF1932 at 588.789 kb on + strand at 588.790 kb on - strand at 588.790 kb on - strand at 589.243 kb on - strand, within GFF1933 at 589.285 kb on - strand, within GFF1933 at 589.299 kb on + strand, within GFF1933 at 589.300 kb on - strand, within GFF1933 at 589.300 kb on - strand, within GFF1933 at 589.608 kb on + strand at 589.699 kb on + strand at 589.721 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 587,938 - GFF1931 0.65 -0.1 588,111 + GFF1931 0.88 -1.0 588,111 + GFF1931 0.88 +0.9 588,111 + GFF1931 0.88 -0.3 588,111 + GFF1931 0.88 +0.1 588,112 - GFF1931 0.88 +0.3 588,112 - GFF1931 0.88 -0.4 588,112 - GFF1931 0.88 +0.2 588,112 - GFF1931 0.88 +0.8 588,114 - GFF1931 0.88 +0.2 588,452 + GFF1932 0.41 -1.1 588,452 + GFF1932 0.41 +0.2 588,452 + GFF1932 0.41 -0.6 588,452 + GFF1932 0.41 +1.7 588,453 - GFF1932 0.42 -0.2 588,453 - GFF1932 0.42 -2.5 588,619 + GFF1932 0.72 +0.3 588,619 + GFF1932 0.72 +0.3 588,620 - GFF1932 0.72 -0.9 588,620 - GFF1932 0.72 -0.3 588,696 + GFF1932 0.86 +0.1 588,696 + GFF1932 0.86 +0.1 588,697 - GFF1932 0.86 -0.1 588,697 - GFF1932 0.86 +1.1 588,716 - GFF1932 0.89 -0.3 588,789 + +0.5 588,790 - -0.1 588,790 - +0.1 589,243 - GFF1933 0.45 +1.1 589,285 - GFF1933 0.51 -0.2 589,299 + GFF1933 0.53 -1.4 589,300 - GFF1933 0.53 +1.0 589,300 - GFF1933 0.53 -0.2 589,608 + +0.7 589,699 + +0.1 589,721 + -0.6
Or see this region's nucleotide sequence