Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1928 and GFF1929 are separated by 142 nucleotides GFF1929 and GFF1930 overlap by 4 nucleotides GFF1930 and GFF1931 overlap by 4 nucleotides GFF1931 and GFF1932 are separated by 16 nucleotides
GFF1928 - hypothetical protein, at 584,887 to 585,366
GFF1928
GFF1929 - Phosphatidylglycerol--prolipoprotein diacylglyceryl transferase, at 585,509 to 586,327
GFF1929
GFF1930 - hypothetical protein, at 586,324 to 587,442
GFF1930
GFF1931 - Polyphenol oxidase, at 587,439 to 588,206
GFF1931
GFF1932 - hypothetical protein, at 588,223 to 588,774
GFF1932
Position (kb) 586
587
588 Strain fitness (log2 ratio) -1
0
1
2 at 587.526 kb on + strand, within GFF1931 at 587.526 kb on + strand, within GFF1931 at 587.526 kb on + strand, within GFF1931 at 587.526 kb on + strand, within GFF1931 at 587.527 kb on - strand, within GFF1931 at 587.719 kb on + strand, within GFF1931 at 587.867 kb on + strand, within GFF1931 at 587.898 kb on - strand, within GFF1931 at 587.920 kb on + strand, within GFF1931 at 587.921 kb on - strand, within GFF1931 at 587.938 kb on - strand, within GFF1931 at 588.111 kb on + strand, within GFF1931 at 588.111 kb on + strand, within GFF1931 at 588.111 kb on + strand, within GFF1931 at 588.111 kb on + strand, within GFF1931 at 588.112 kb on - strand, within GFF1931 at 588.112 kb on - strand, within GFF1931 at 588.112 kb on - strand, within GFF1931 at 588.112 kb on - strand, within GFF1931 at 588.114 kb on - strand, within GFF1931
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 587,526 + GFF1931 0.11 -1.5 587,526 + GFF1931 0.11 +2.1 587,526 + GFF1931 0.11 -0.3 587,526 + GFF1931 0.11 -0.4 587,527 - GFF1931 0.11 -1.1 587,719 + GFF1931 0.36 -0.3 587,867 + GFF1931 0.56 -0.7 587,898 - GFF1931 0.60 +0.4 587,920 + GFF1931 0.63 -0.4 587,921 - GFF1931 0.63 -0.3 587,938 - GFF1931 0.65 -0.1 588,111 + GFF1931 0.88 -1.0 588,111 + GFF1931 0.88 +0.9 588,111 + GFF1931 0.88 -0.3 588,111 + GFF1931 0.88 +0.1 588,112 - GFF1931 0.88 +0.3 588,112 - GFF1931 0.88 -0.4 588,112 - GFF1931 0.88 +0.2 588,112 - GFF1931 0.88 +0.8 588,114 - GFF1931 0.88 +0.2
Or see this region's nucleotide sequence