Strain Fitness in Xanthobacter sp. DMC5 around GFF1929

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1927 and GFF1928 are separated by 134 nucleotidesGFF1928 and GFF1929 are separated by 142 nucleotidesGFF1929 and GFF1930 overlap by 4 nucleotides GFF1927 - Ubiquinone biosynthesis accessory factor UbiK, at 584,438 to 584,752 GFF1927 GFF1928 - hypothetical protein, at 584,887 to 585,366 GFF1928 GFF1929 - Phosphatidylglycerol--prolipoprotein diacylglyceryl transferase, at 585,509 to 586,327 GFF1929 GFF1930 - hypothetical protein, at 586,324 to 587,442 GFF1930 Position (kb) 585 586 587Strain fitness (log2 ratio) -1 0 1 2at 584.903 kb on + strandat 584.903 kb on + strandat 584.903 kb on + strandat 584.904 kb on - strandat 585.002 kb on + strand, within GFF1928at 585.003 kb on - strand, within GFF1928at 585.089 kb on + strand, within GFF1928at 585.090 kb on - strand, within GFF1928

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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584,903 + -0.1
584,903 + +1.3
584,903 + +0.7
584,904 - -0.2
585,002 + GFF1928 0.24 +1.8
585,003 - GFF1928 0.24 +0.1
585,089 + GFF1928 0.42 +0.3
585,090 - GFF1928 0.42 -0.3

Or see this region's nucleotide sequence