Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1925 and GFF1926 are separated by 163 nucleotides GFF1926 and GFF1927 are separated by 342 nucleotides GFF1927 and GFF1928 are separated by 134 nucleotides
GFF1925 - Pyrroline-5-carboxylate reductase, at 582,595 to 583,431
GFF1925
GFF1926 - hypothetical protein, at 583,595 to 584,095
GFF1926
GFF1927 - Ubiquinone biosynthesis accessory factor UbiK, at 584,438 to 584,752
GFF1927
GFF1928 - hypothetical protein, at 584,887 to 585,366
GFF1928
Position (kb) 583
584
585 Strain fitness (log2 ratio) -1
0
1
2 at 583.499 kb on + strand at 583.499 kb on + strand at 583.499 kb on + strand at 583.500 kb on - strand at 583.500 kb on - strand at 583.500 kb on - strand at 583.500 kb on - strand at 583.542 kb on + strand at 583.683 kb on + strand, within GFF1926 at 583.684 kb on - strand, within GFF1926 at 584.280 kb on + strand at 584.281 kb on - strand at 584.291 kb on + strand at 584.329 kb on + strand at 584.330 kb on - strand at 584.903 kb on + strand at 584.903 kb on + strand at 584.903 kb on + strand at 584.904 kb on - strand at 585.002 kb on + strand, within GFF1928 at 585.003 kb on - strand, within GFF1928 at 585.089 kb on + strand, within GFF1928 at 585.090 kb on - strand, within GFF1928
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 583,499 + +0.5 583,499 + +1.0 583,499 + +0.5 583,500 - -0.2 583,500 - +0.5 583,500 - -0.1 583,500 - +0.2 583,542 + +0.1 583,683 + GFF1926 0.18 +0.6 583,684 - GFF1926 0.18 -0.1 584,280 + +0.5 584,281 - -1.2 584,291 + -0.1 584,329 + +0.9 584,330 - +0.3 584,903 + -0.1 584,903 + +1.3 584,903 + +0.7 584,904 - -0.2 585,002 + GFF1928 0.24 +1.8 585,003 - GFF1928 0.24 +0.1 585,089 + GFF1928 0.42 +0.3 585,090 - GFF1928 0.42 -0.3
Or see this region's nucleotide sequence