Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1923 and GFF1924 are separated by 49 nucleotides GFF1924 and GFF1925 are separated by 31 nucleotides GFF1925 and GFF1926 are separated by 163 nucleotides
GFF1923 - hypothetical protein, at 581,348 to 581,848
GFF1923
GFF1924 - hypothetical protein, at 581,898 to 582,563
GFF1924
GFF1925 - Pyrroline-5-carboxylate reductase, at 582,595 to 583,431
GFF1925
GFF1926 - hypothetical protein, at 583,595 to 584,095
GFF1926
Position (kb) 582
583
584 Strain fitness (log2 ratio) -1
0
1 at 581.775 kb on + strand, within GFF1923 at 581.775 kb on + strand, within GFF1923 at 581.775 kb on + strand, within GFF1923 at 581.776 kb on - strand, within GFF1923 at 581.784 kb on + strand, within GFF1923 at 581.814 kb on + strand at 581.815 kb on - strand at 581.815 kb on - strand at 581.886 kb on + strand at 581.886 kb on + strand at 581.980 kb on + strand, within GFF1924 at 582.579 kb on + strand at 583.499 kb on + strand at 583.499 kb on + strand at 583.499 kb on + strand at 583.500 kb on - strand at 583.500 kb on - strand at 583.500 kb on - strand at 583.500 kb on - strand at 583.542 kb on + strand at 583.683 kb on + strand, within GFF1926 at 583.684 kb on - strand, within GFF1926 at 584.280 kb on + strand at 584.281 kb on - strand at 584.291 kb on + strand at 584.329 kb on + strand at 584.330 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 581,775 + GFF1923 0.85 -0.0 581,775 + GFF1923 0.85 -0.2 581,775 + GFF1923 0.85 +0.9 581,776 - GFF1923 0.85 -0.1 581,784 + GFF1923 0.87 +0.3 581,814 + +0.6 581,815 - -0.1 581,815 - +0.1 581,886 + +0.2 581,886 + -1.6 581,980 + GFF1924 0.12 +0.4 582,579 + -0.1 583,499 + +0.5 583,499 + +1.0 583,499 + +0.5 583,500 - -0.2 583,500 - +0.5 583,500 - -0.1 583,500 - +0.2 583,542 + +0.1 583,683 + GFF1926 0.18 +0.6 583,684 - GFF1926 0.18 -0.1 584,280 + +0.5 584,281 - -1.2 584,291 + -0.1 584,329 + +0.9 584,330 - +0.3
Or see this region's nucleotide sequence