Strain Fitness in Xanthobacter sp. DMC5 around GFF1919

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1918 and GFF1919 are separated by 42 nucleotidesGFF1919 and GFF1920 are separated by 50 nucleotidesGFF1920 and GFF1921 are separated by 215 nucleotides GFF1918 - GTPase Der, at 577,425 to 578,813 GFF1918 GFF1919 - hypothetical protein, at 578,856 to 579,116 GFF1919 GFF1920 - hypothetical protein, at 579,167 to 579,856 GFF1920 GFF1921 - CO-responsive transcriptional regulator RcoM, at 580,072 to 580,872 GFF1921 Position (kb) 578 579 580Strain fitness (log2 ratio) -1 0 1at 578.858 kb on - strandat 580.021 kb on + strandat 580.021 kb on + strandat 580.026 kb on + strandat 580.072 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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578,858 - +0.8
580,021 + +0.1
580,021 + +0.3
580,026 + -0.2
580,072 - -1.1

Or see this region's nucleotide sequence